Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G12390 173 / 9e-56 Cornichon family protein (.1) AT1G12340 172 / 1e-55 Cornichon family protein (.1) AT1G62880 167 / 2e-53 Cornichon family protein (.1.2) AT4G12090 135 / 1e-40 Cornichon family protein (.1) AT3G12180 107 / 2e-29 Cornichon family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028906 [exp] 233 / 3e-79 AT1G12390 207 / 2e-70 Cornichon family protein (.1) Lus10007000 [exp] 192 / 1e-62 AT1G12390 176 / 3e-57 Cornichon family protein (.1) Lus10006997 [exp] 192 / 1e-62 AT1G12390 176 / 3e-57 Cornichon family protein (.1) Lus10000384 [exp] 153 / 2e-47 AT1G12390 161 / 5e-52 Cornichon family protein (.1) Lus10009295 [exp] 127 / 8e-38 AT1G12390 142 / 7e-45 Cornichon family protein (.1) Lus10015866 [exp] 126 / 1e-37 AT1G12390 128 / 1e-39 Cornichon family protein (.1) Lus10030270 [exp] 100 / 1e-27 AT1G12390 94 / 2e-26 Cornichon family protein (.1) Lus10028907 [exp] 49 / 9e-07 AT4G22760 632 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10004023 [exp] 0 / 1 AT1G12340 101 / 5e-30 Cornichon family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G116400 [exp] 202 / 4e-67 AT1G12390 182 / 2e-60 Cornichon family protein (.1) Potri.001G116100 [exp] 201 / 2e-66 AT1G12390 184 / 3e-61 Cornichon family protein (.1) Potri.002G148500 [exp] 101 / 1e-27 AT1G12390 106 / 9e-31 Cornichon family protein (.1) Potri.006G057300 [exp] 87 / 1e-21 AT3G12180 109 / 3e-31 Cornichon family protein (.1) Potri.016G051000 [exp] 86 / 4e-21 AT3G12180 142 / 4e-44 Cornichon family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03311 [flax] [poplar] Cornichon Cornichon protein
Representative CDS sequence Show only first row Show all	>Lus10004320 pacid=23161719 polypeptide=Lus10004320 locus=Lus10004320.g ID=Lus10004320.BGIv1.0 annot-version=v1.0 ATGGGCTATATTTTTTTATTGAGCTTTGTCCTTGGTGAGGCCCAATATCATCGGATTTGTCTTTTCCCGGCTCGGCTCGGCTCGGCGCCACTTCCTCCTG CCTGCCGTCAGCACCTAACCAACCGCCGTCGACTCCCGGTGACGAAATACCTCACTCTGTCCGTACCGCCTCATCTTCAAAGCTTTTGGGATAGTGATGG AAACTCCTCTGCTCAATTCTTGCCTGCTGAGTCAACAAGTAGAAAGGAAGCGATTCCTGTTAAATTTTCCTGCAATGGAAAGCTGATGTGCTTGGCAGAT TTGGAGTTCGATTACATCAATCCATATGACTCTTCTTCAAGGATAAACAAAGTGATTTTGCCAGAGTATATCACGGTAGGAGCTTTGTGCTTGTTTTACC TTCTCACAGGGCATTGGTGTATGGCTCTCTTGTGTGCTCCTTACCTCTACTACAACGTCAGGCTATACACTCGAAAACAACATCTGATAGATGTTACCGA GGTTTTCAACTTGCTGCATGCCGAAAAGAAGCAGCGGCTATACAAATTGTTCTACCTCATTGTCCTCCTTTTTCTAGCAATATTCTGGATGATCTTGACG GCATTGGAAGATCACGACATGGACTGA
AA sequence Show only first row Show all	>Lus10004320 pacid=23161719 polypeptide=Lus10004320 locus=Lus10004320.g ID=Lus10004320.BGIv1.0 annot-version=v1.0 MGYIFLLSFVLGEAQYHRICLFPARLGSAPLPPACRQHLTNRRRLPVTKYLTLSVPPHLQSFWDSDGNSSAQFLPAESTSRKEAIPVKFSCNGKLMCLAD LEFDYINPYDSSSRINKVILPEYITVGALCLFYLLTGHWCMALLCAPYLYYNVRLYTRKQHLIDVTEVFNLLHAEKKQRLYKLFYLIVLLFLAIFWMILT ALEDHDMD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G12390			Cornichon family protein (.1)		Lus10004320 [exp]	0	1
AT5G55290			ATPase, V0 complex, subunit E ...		Lus10032570 [exp]	2.0	0.8790
AT2G23940			Protein of unknown function (D...		Lus10041903 [exp]	2.4	0.8823
AT5G25360			unknown protein		Lus10002164 [exp]	4.2	0.8146
AT1G51740		ATSYP81, SYP81,...	ORTHOLOG OF YEAST UFE1 \(UNKNO...		Lus10040237 [exp]	4.9	0.8550
AT5G59610			Chaperone DnaJ-domain superfam...		Lus10016510 [exp]	4.9	0.8658
AT5G59460			scarecrow-like transcription f...		Lus10004969 [exp]	6.7	0.8740
AT1G28250			unknown protein		Lus10014006 [exp]	7.3	0.8316
AT2G37120			S1FA-like DNA-binding protein ...		Lus10023177 [exp]	8.4	0.8277
AT3G20970		ATNFU2, NFU4	ARABIDOPSIS THALIANA NFU DOMAI...		Lus10034140 [exp]	9.5	0.8551
AT1G28250			unknown protein		Lus10015429 [exp]	12.6	0.8021

Compare expression of checked genes

Lus10004320 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.