Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G12110 422 / 2e-150 ATSMO1-1, SMO1-1 sterol-4alpha-methyl oxidase 1-1 (.1) AT4G22756 420 / 1e-149 ATSMO1-2, ATSMO1, SMO1-2 sterol C4-methyl oxidase 1-2 (.1) AT4G22753 392 / 2e-138 ATSMO1-3, ATSMO1, SMO1-3 sterol 4-alpha methyl oxidase 1-3 (.1.2) AT1G07420 227 / 4e-74 SMO2-1, ATSMO1, ATSMO2-2, SMO2-2 Arabidopsis thaliana sterol 4-alpha-methyl oxidase 1, sterol 4-alpha-methyl-oxidase 2-1 (.1.2) AT2G29390 221 / 7e-72 ATSMO2-2, SMO2-2, ATSMO2, SMO2-1 Arabidopsis thaliana sterol 4-alpha-methyl-oxidase 2-2, sterol 4-alpha-methyl-oxidase 2-2 (.1.2.3.4.5) AT1G14290 61 / 8e-11 SBH2 sphingoid base hydroxylase 2 (.1) AT1G69640 59 / 4e-10 SBH1 sphingoid base hydroxylase 1 (.1) AT3G02590 43 / 0.0001 Fatty acid hydroxylase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032193 [exp] 447 / 2e-160 AT4G12110 483 / 4e-174 sterol-4alpha-methyl oxidase 1-1 (.1) Lus10024555 [exp] 410 / 4e-146 AT4G12110 442 / 1e-158 sterol-4alpha-methyl oxidase 1-1 (.1) Lus10004324 [exp] 348 / 2e-121 AT4G22756 345 / 3e-120 sterol C4-methyl oxidase 1-2 (.1) Lus10004322 [exp] 345 / 3e-120 AT4G12110 357 / 2e-124 sterol-4alpha-methyl oxidase 1-1 (.1) Lus10028908 [exp] 319 / 1e-109 AT4G22756 288 / 2e-97 sterol C4-methyl oxidase 1-2 (.1) Lus10016492 [exp] 222 / 1e-71 AT1G07420 463 / 3e-167 Arabidopsis thaliana sterol 4-alpha-methyl oxidase 1, sterol 4-alpha-methyl-oxidase 2-1 (.1.2) Lus10040739 [exp] 220 / 4e-71 AT2G29390 454 / 5e-164 Arabidopsis thaliana sterol 4-alpha-methyl-oxidase 2-2, sterol 4-alpha-methyl-oxidase 2-2 (.1.2.3.4.5) Lus10001556 [exp] 211 / 1e-67 AT1G07420 458 / 3e-165 Arabidopsis thaliana sterol 4-alpha-methyl oxidase 1, sterol 4-alpha-methyl-oxidase 2-1 (.1.2) Lus10004988 [exp] 117 / 2e-32 AT1G07420 206 / 5e-68 Arabidopsis thaliana sterol 4-alpha-methyl oxidase 1, sterol 4-alpha-methyl-oxidase 2-1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G116500 [exp] 432 / 3e-154 AT4G12110 439 / 1e-156 sterol-4alpha-methyl oxidase 1-1 (.1) Potri.003G116000 [exp] 419 / 4e-149 AT4G12110 448 / 3e-160 sterol-4alpha-methyl oxidase 1-1 (.1) Potri.014G069500 [exp] 363 / 3e-127 AT4G12110 403 / 2e-142 sterol-4alpha-methyl oxidase 1-1 (.1) Potri.009G037400 [exp] 216 / 8e-70 AT1G07420 470 / 5e-170 Arabidopsis thaliana sterol 4-alpha-methyl oxidase 1, sterol 4-alpha-methyl-oxidase 2-1 (.1.2) Potri.001G245300 [exp] 213 / 1e-68 AT1G07420 476 / 2e-172 Arabidopsis thaliana sterol 4-alpha-methyl oxidase 1, sterol 4-alpha-methyl-oxidase 2-1 (.1.2) Potri.002G061400 [exp] 52 / 1e-07 AT1G69640 311 / 1e-107 sphingoid base hydroxylase 1 (.1) Potri.005G200000 [exp] 44 / 6e-05 AT1G69640 315 / 7e-109 sphingoid base hydroxylase 1 (.1) Potri.017G116600 [exp] 41 / 0.0005 AT3G02580 455 / 1e-163 DWARF 7, BOULE 1, sterol 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04116 [flax] [poplar] FA_hydroxylase Fatty acid hydroxylase superfamily
Representative CDS sequence Show only first row Show all	>Lus10004321 pacid=23161740 polypeptide=Lus10004321 locus=Lus10004321.g ID=Lus10004321.BGIv1.0 annot-version=v1.0 ATGGCCGAAACCCTCTGGTTCAATTTCTCCTCTGACAAATCCGATTATTTCATCTACTGCCACACCATTCTCATCCTCTTCCTAATCTTCTCCTTAGCCC CTCTCCCGTTCATCTCCCTCCACCTCCTCCAATCCGCCTCGTTCCACAACAAGTACAAGATCCAGCCCAAAACCCACCCTTCTCCTGCCGACATTCTCAA GTGCTACAAGGATGTAATGCTCACTTTCTGCTACATCGTCGGCCCGCTTCAGCTCTTCTCCTATCCTTCGATCAAGATGGTGGGGATTCATACGGGTCTG CCTCTGCCGTCAGGATGGGAGATTCTGTCACAATTGTTGGTTTACTTCCTGATTGAGGATTATACGAATTACTGGATCCATAGGTTGCTTCATTGTAAAT GGGGGTACGAGAACATTCACAAGGTTCATCACCAATACGTAGCTCCGATTGCGTTTGCTGCACCGTATGCTCACTGGGCTGAGATTCTGATCCTTGGCAT CCCGACTTTCTTGGGTCCGGCTTTGGTTCCTGGACACATTATCACATTTTGGCTTTGGATCTCTCTCAGGCAGATGGAAGCCATTGAAACCCACAGCGGA TATGACTTCCCATGGAGTCTTAACAAATACATCCCGTTCTATGGTGGAGCCGAGTACCACGATTACCATCACTACGTGGGAGGGCAAAGCCAGAGCAATT TCGCATCGGTCTTCACCTACTGTGATTACATCTATGGAACTGACAAGGGATATCGATATCAGAAGAAGATCCTACAGAAAATGCATGAGGGAGAGGGAGG CTTAAAGTTGGAGTAG
AA sequence Show only first row Show all	>Lus10004321 pacid=23161740 polypeptide=Lus10004321 locus=Lus10004321.g ID=Lus10004321.BGIv1.0 annot-version=v1.0 MAETLWFNFSSDKSDYFIYCHTILILFLIFSLAPLPFISLHLLQSASFHNKYKIQPKTHPSPADILKCYKDVMLTFCYIVGPLQLFSYPSIKMVGIHTGL PLPSGWEILSQLLVYFLIEDYTNYWIHRLLHCKWGYENIHKVHHQYVAPIAFAAPYAHWAEILILGIPTFLGPALVPGHIITFWLWISLRQMEAIETHSG YDFPWSLNKYIPFYGGAEYHDYHHYVGGQSQSNFASVFTYCDYIYGTDKGYRYQKKILQKMHEGEGGLKLE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G12110		ATSMO1-1, SMO1-...	sterol-4alpha-methyl oxidase 1...		Lus10004321 [exp]	0	1
AT4G23820			Pectin lyase-like superfamily ...		Lus10032374 [exp]	2.2	0.8710
AT3G16370			GDSL-like Lipase/Acylhydrolase...		Lus10037598 [exp]	2.6	0.8976
AT1G09310			Protein of unknown function, D...		Lus10039866 [exp]	3.2	0.8836
AT1G27950		LTPG1	glycosylphosphatidylinositol-a...		Lus10011358 [exp]	6.2	0.8748
AT5G09520		PELPK2	Pro-Glu-Leu|Ile|Val-Pro-Lys 2,...		Lus10039881 [exp]	6.9	0.8300
AT5G04440			Protein of unknown function (D...		Lus10038659 [exp]	11.7	0.8628
AT4G36250		ALDH3F1	aldehyde dehydrogenase 3F1 (.1...		Lus10041806 [exp]	12.3	0.8459
AT5G60750			CAAX amino terminal protease f...		Lus10028751 [exp]	13.0	0.7867
AT3G48460			GDSL-like Lipase/Acylhydrolase...		Lus10034763 [exp]	13.1	0.8148
AT1G29120			Hydrolase-like protein family ...		Lus10001893 [exp]	13.8	0.7964

Compare expression of checked genes

Lus10004321 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.