Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G12110 344 / 3e-119 ATSMO1-1, SMO1-1 sterol-4alpha-methyl oxidase 1-1 (.1) AT4G22756 343 / 7e-119 ATSMO1-2, ATSMO1, SMO1-2 sterol C4-methyl oxidase 1-2 (.1) AT4G22753 338 / 4e-117 ATSMO1-3, ATSMO1, SMO1-3 sterol 4-alpha methyl oxidase 1-3 (.1.2) AT1G07420 200 / 4e-63 SMO2-1, ATSMO1, ATSMO2-2, SMO2-2 Arabidopsis thaliana sterol 4-alpha-methyl oxidase 1, sterol 4-alpha-methyl-oxidase 2-1 (.1.2) AT2G29390 181 / 1e-55 ATSMO2-2, SMO2-2, ATSMO2, SMO2-1 Arabidopsis thaliana sterol 4-alpha-methyl-oxidase 2-2, sterol 4-alpha-methyl-oxidase 2-2 (.1.2.3.4.5) AT1G14290 59 / 5e-10 SBH2 sphingoid base hydroxylase 2 (.1) AT1G69640 49 / 8e-07 SBH1 sphingoid base hydroxylase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032193 [exp] 383 / 2e-134 AT4G12110 483 / 4e-174 sterol-4alpha-methyl oxidase 1-1 (.1) Lus10024555 [exp] 372 / 2e-130 AT4G12110 442 / 1e-158 sterol-4alpha-methyl oxidase 1-1 (.1) Lus10004324 [exp] 359 / 1e-125 AT4G22756 345 / 3e-120 sterol C4-methyl oxidase 1-2 (.1) Lus10004321 [exp] 345 / 4e-120 AT4G12110 422 / 2e-150 sterol-4alpha-methyl oxidase 1-1 (.1) Lus10028908 [exp] 252 / 3e-83 AT4G22756 288 / 2e-97 sterol C4-methyl oxidase 1-2 (.1) Lus10001556 [exp] 189 / 8e-59 AT1G07420 458 / 3e-165 Arabidopsis thaliana sterol 4-alpha-methyl oxidase 1, sterol 4-alpha-methyl-oxidase 2-1 (.1.2) Lus10016492 [exp] 187 / 8e-58 AT1G07420 463 / 3e-167 Arabidopsis thaliana sterol 4-alpha-methyl oxidase 1, sterol 4-alpha-methyl-oxidase 2-1 (.1.2) Lus10040739 [exp] 186 / 1e-57 AT2G29390 454 / 5e-164 Arabidopsis thaliana sterol 4-alpha-methyl-oxidase 2-2, sterol 4-alpha-methyl-oxidase 2-2 (.1.2.3.4.5) Lus10004988 [exp] 97 / 3e-24 AT1G07420 206 / 5e-68 Arabidopsis thaliana sterol 4-alpha-methyl oxidase 1, sterol 4-alpha-methyl-oxidase 2-1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G116000 [exp] 370 / 1e-129 AT4G12110 448 / 3e-160 sterol-4alpha-methyl oxidase 1-1 (.1) Potri.001G116500 [exp] 365 / 1e-127 AT4G12110 439 / 1e-156 sterol-4alpha-methyl oxidase 1-1 (.1) Potri.014G069500 [exp] 316 / 4e-108 AT4G12110 403 / 2e-142 sterol-4alpha-methyl oxidase 1-1 (.1) Potri.001G245300 [exp] 186 / 1e-57 AT1G07420 476 / 2e-172 Arabidopsis thaliana sterol 4-alpha-methyl oxidase 1, sterol 4-alpha-methyl-oxidase 2-1 (.1.2) Potri.009G037400 [exp] 185 / 2e-57 AT1G07420 470 / 5e-170 Arabidopsis thaliana sterol 4-alpha-methyl oxidase 1, sterol 4-alpha-methyl-oxidase 2-1 (.1.2) Potri.002G061400 [exp] 42 / 0.0002 AT1G69640 311 / 1e-107 sphingoid base hydroxylase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04116 [flax] [poplar] FA_hydroxylase Fatty acid hydroxylase superfamily
Representative CDS sequence Show only first row Show all	>Lus10004322 pacid=23161753 polypeptide=Lus10004322 locus=Lus10004322.g ID=Lus10004322.BGIv1.0 annot-version=v1.0 ATGCTGCCGTACAACACCATCGACTCGGCGGTGGCTAGCTTGGGCCGGAACCTCACCTACGCCGAAACTCTGTGGTTCAAATACTCTTCCGAAAAGTCCG ACTACTTCCTCTTCTGCCACTCTATTCTCTGGGTTCTCCTCGTCTTCTCCTTAGCTCCCCTCCCATTCATCTTACTCCAGCAATACCCTTATTTCGACAA GTACAAGATCCAGCCGAAAGTCCGTCTCTCCGCCGCCGACATCTTCGTGTGTTACAAGAGCGCCGCCGTTTCTTTATTTCTTGTTTTGGGTCCTCTACAG CTCATCTCTTATTCTTTGTATGAGAAAGTTGGAATCCGCACGAGCTTGGTGTTGCCATCAGGATGGGAAATTGCTGCGCAATTTTCGGTTTACTTGTTAA TCGAGGATTATACATTCTACTGGATCCATAGGTTACTTCATCACAAATGGGTGTACGAGAGAAGTCACAAAGTTCATCACGAATACACAGCTCCAATTGC ATATGCTGCAGCATATGCTCACTGGACTGAGATTTTCATCCTTGGGTTCCCATCCTTTCTGGGGCCAGCAATGGTTCCTGGACACCTCACTACTCTTTGG CTATGGTTTTCGGTACGACAGATGGAGGTGCTTGTTACACACAGCGGTTATGATTTTCCATGGAGTCTCAACAAATATTTACCATTTTACGGAGGAGCTA AATACCATGATTATCATCACTCCGTTGGAGGTCAAACTCAGAGCAACTTTGCATCCCTCTTCACATATTGCGACTATATTTATGGAACCCACAAGGTCAT CATAATTAACAATCATTACAAATATCTCACTTACTTGCGTATCATACCGTACATATTTTACTTCTTGCACTATGTATTTTAA
AA sequence Show only first row Show all	>Lus10004322 pacid=23161753 polypeptide=Lus10004322 locus=Lus10004322.g ID=Lus10004322.BGIv1.0 annot-version=v1.0 MLPYNTIDSAVASLGRNLTYAETLWFKYSSEKSDYFLFCHSILWVLLVFSLAPLPFILLQQYPYFDKYKIQPKVRLSAADIFVCYKSAAVSLFLVLGPLQ LISYSLYEKVGIRTSLVLPSGWEIAAQFSVYLLIEDYTFYWIHRLLHHKWVYERSHKVHHEYTAPIAYAAAYAHWTEIFILGFPSFLGPAMVPGHLTTLW LWFSVRQMEVLVTHSGYDFPWSLNKYLPFYGGAKYHDYHHSVGGQTQSNFASLFTYCDYIYGTHKVIIINNHYKYLTYLRIIPYIFYFLHYVF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G12110		ATSMO1-1, SMO1-...	sterol-4alpha-methyl oxidase 1...		Lus10004322 [exp]	0	1
AT2G25770			Polyketide cyclase/dehydrase a...		Lus10040227 [exp]	1.4	0.8571
					Lus10034684 [exp]	3.6	0.7405
AT1G79960	OFP	ATOFP14, OFP14	ovate family protein 14 (.1)		Lus10035891 [exp]	8.7	0.7994
AT3G45400			exostosin family protein (.1)		Lus10020308 [exp]	9.9	0.7499
AT1G20925			Auxin efflux carrier family pr...		Lus10004287 [exp]	9.9	0.7402
AT4G18210		ATPUP10	purine permease 10 (.1)		Lus10023318 [exp]	11.5	0.7780
AT1G52240		PIRF1, ATROPGEF...	phytochrome interacting RopGEF...		Lus10022596 [exp]	12.0	0.8308
AT2G30900		TBL43	TRICHOME BIREFRINGENCE-LIKE 43...		Lus10020786 [exp]	14.5	0.8388
AT2G34160			Alba DNA/RNA-binding protein (...		Lus10021222 [exp]	17.7	0.7365
					Lus10039897 [exp]	24.0	0.7986

Compare expression of checked genes

Lus10004322 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.