Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G02780 733 / 0 ATCPS1, ABC33, GA1 GA REQUIRING 1, CPP synthase, ARABIDOPSIS THALIANA ENT-COPALYL DIPHOSPHATE SYNTHETASE 1, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT1G79460 257 / 4e-74 ATKS1, ATKS, GA2 GA REQUIRING 2, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE 1, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT1G61120 157 / 2e-39 TPS4, GES, TPS04 TERPENE SYNTHASE 4, GERANYLLINALOOL SYNTHASE, terpene synthase 04 (.1) AT4G16740 94 / 3e-20 ATTPS03 terpene synthase 03 (.1.2) AT2G24210 91 / 1e-18 AtTPS10 terpene synthase 10 (.1) AT5G23960 82 / 5e-16 ATTPS21 terpene synthase 21 (.1.2) AT3G25810 79 / 5e-15 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT4G16730 76 / 5e-14 AtTPS02 terpene synthase 02 (.1) AT3G25820 66 / 4e-11 ATTPS-CIN "terpene synthase-like sequence-1,8-cineole", terpene synthase-like sequence-1,8-cineole (.1.2) AT1G61680 66 / 5e-11 ATTPS14 terpene synthase 14 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022047 [exp] 994 / 0 AT4G02780 812 / 0.0 GA REQUIRING 1, CPP synthase, ARABIDOPSIS THALIANA ENT-COPALYL DIPHOSPHATE SYNTHETASE 1, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Lus10042593 [exp] 990 / 0 AT4G02780 808 / 0.0 GA REQUIRING 1, CPP synthase, ARABIDOPSIS THALIANA ENT-COPALYL DIPHOSPHATE SYNTHETASE 1, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Lus10006925 [exp] 961 / 0 AT4G02780 759 / 0.0 GA REQUIRING 1, CPP synthase, ARABIDOPSIS THALIANA ENT-COPALYL DIPHOSPHATE SYNTHETASE 1, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Lus10006917 [exp] 328 / 1e-106 AT4G02780 210 / 3e-62 GA REQUIRING 1, CPP synthase, ARABIDOPSIS THALIANA ENT-COPALYL DIPHOSPHATE SYNTHETASE 1, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Lus10016598 [exp] 248 / 2e-70 AT1G79460 776 / 0.0 GA REQUIRING 2, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE 1, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Lus10004906 [exp] 241 / 3e-68 AT1G79460 531 / 1e-178 GA REQUIRING 2, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE 1, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Lus10005399 [exp] 231 / 1e-64 AT1G79460 515 / 1e-172 GA REQUIRING 2, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE 1, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Lus10024120 [exp] 230 / 1e-63 AT1G79460 522 / 3e-173 GA REQUIRING 2, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE 1, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Lus10012880 [exp] 226 / 8e-63 AT1G79460 677 / 0.0 GA REQUIRING 2, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE 1, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G052100 [exp] 919 / 0 AT4G02780 863 / 0.0 GA REQUIRING 1, CPP synthase, ARABIDOPSIS THALIANA ENT-COPALYL DIPHOSPHATE SYNTHETASE 1, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Potri.005G210300 [exp] 908 / 0 AT4G02780 829 / 0.0 GA REQUIRING 1, CPP synthase, ARABIDOPSIS THALIANA ENT-COPALYL DIPHOSPHATE SYNTHETASE 1, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Potri.008G082400 [exp] 288 / 1e-85 AT1G79460 816 / 0.0 GA REQUIRING 2, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE 1, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Potri.008G082700 [exp] 288 / 2e-85 AT1G79460 818 / 0.0 GA REQUIRING 2, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE 1, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Potri.004G037900 [exp] 223 / 1e-61 AT1G61120 782 / 0.0 TERPENE SYNTHASE 4, GERANYLLINALOOL SYNTHASE, terpene synthase 04 (.1) Potri.017G041700 [exp] 110 / 6e-25 AT3G25810 432 / 3e-145 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Potri.007G118600 [exp] 105 / 3e-23 AT4G16740 462 / 3e-157 terpene synthase 03 (.1.2) Potri.019G023006 [exp] 97 / 1e-20 AT3G25830 540 / 0.0 "terpene synthase-like sequence-1,8-cineole", terpene synthase-like sequence-1,8-cineole (.1) Potri.019G023014 [exp] 95 / 2e-20 AT4G16740 294 / 1e-96 terpene synthase 03 (.1.2) Potri.015G032100 [exp] 96 / 3e-20 AT5G23960 444 / 8e-151 terpene synthase 21 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01397 [flax] [poplar] Terpene_synth Terpene synthase, N-terminal domain CL0613 [flax] [poplar] Terp_synthase PF03936 [flax] [poplar] Terpene_synth_C Terpene synthase family, metal binding domain
Representative CDS sequence Show only first row Show all	>Lus10004323 pacid=23161752 polypeptide=Lus10004323 locus=Lus10004323.g ID=Lus10004323.BGIv1.0 annot-version=v1.0 ATGGCCTCGTTGATACACAGGGCAACAACCGTCGCTTCCTCTTGCTCGCCCGTACTTAAACAGGCTTCGACCTGGTCGTCAGTCGATTTAAGTCCTTGGT TTTTCCCGTCTCAAGGGTACGTTGCCCCGAAATACCAAAAGTTCGAAGTTAATATTGGCCTAACTAGATGCAACGTCATTTCCAAGTCTCCGACTCAAGA TAGAAATCTCAACCAAGGTGCCAGCCTCCACGAGATTGCAAAAGAAGATGCTCACATCGAGCCAGAAGCTAATCTCAAGGTGGCGATATCAAACGTGACA AACGAGCTTGTAAAGACGATCAAGTCAATGCTGAGCTCCATGGAAGACGGCGAGACGAACGCCTCGCCGTACGATACAGCTTGGCTAGCTCTAGTGAAAG ATGCCAATGATTGCACCCGGCCACGATTCCCCGAAACCCTTGAATGGATCGCGAACAACCAGCTCCCCGACGGCTCGTGGGGCGACGCGGACATTTTCCT GGCTCACGACAGGATGCTCAACACTCTGGCATGCGTTATAGCGCTTACAACCTGGAATGTACACTCCGACAAGTGTCAGCTAGGGTTGAAGTTCTTTAAC GAGAATCTGAGGAGGCTAGAGGACGAGAACGTAACGCACATGCCGATCGGATTCGAAGTTGTGTTCCCGAAGCTTCTCGAGCTCGCCGATGGGTTGGACC TCGAAGTGGACCCTGATCATTCCCCTGTTTTGCAGCAGATTTACGCTGCTGGAAGCCTCAAGCTTAAGAGGATTCCGAAGGACATCTTGCACAAATTTCC GACAACGTTGCTCTATAGCTTGGAAGGAATGGGAGGGCTAGATTGGGAAAAGCTTCTGAAATTCCAGAATGAAGATGGGTCTTTCTTGTTTTCCCCTGCA TCGACGGCCTATGCTCTGTCTCAGACCAATGATCAAAAGTGCTTTGAGTACCTTAGTAAGATTGCCGACAAGTTCCAAGGAGGAGTTCCAAACGTTTACC CAGTTGATCTGTTCGAAAACATATGGGCTATTGATCGGCTGCAACGTCTGGGAATTTCAAGATTCTTCCAGCCAGAAATTAGAAAATGTCTCGATTACAT TGAAAAATTCTGGGATGAGAAGGGAATTGCTTGGGCCAGTAAATCCAGACTTCATGATGTTGATGTCACAGCCATGGGATTCAGGATTCTAAGAATGCAC GGGCGTCCTGTTTCTCCAGATGTGTTCAACAACTTTGAGAAAGACGGCGGATTGTTCTGCCTTGTCGGGCAATCCGGCCACACAACTACCGAGTTATTCA ACGTGTACAGAGCTTCTCAAATGTTGTTCCCTGGAGAACAAATCATGGAGAATGCTAAACATGGAGCGTATAATCTCTTACGGAAGAAACAGGCTTCGAA TGAGCTGTTCGACAAGTGGATTATCACTAAAGACTTGCCTGGAGAGGTGGGATATGCATTGGACGTCCCGTTCTACGCGAGCTTATCCCGACTAGAGAGC AGGTTCTTCATCGAACACTACGGTGGCGATGAGGATGTTTGGATCGGCAAGACACTTTACAGGATGTATTTTGTGAACAATAACGAGTATTTAGAGCTGG CGAAGATTGACTACAACAATTGCCAAGCATTACATAGGATGGAATGGGACAATCTTCAAAAATGGTACGAGGAACATGGAATGAGAGGATTCGGGTTGAG TGAGGAGAGGCTTCTGTTTCGGTATTACCTAGCTGCCGCGACTGTATTCGAACAGAACAGATCGGAGGAGAGAATGGCGTGGGCGAAAACCACCGCTCTG TTGGAAGTCATTGACAACAACAACAATTCCAAGGACCAGAGAGCTGGATTTGTCCATGAGTTCACCACCCGCGACATTGATGGTCTCGAGGCCTCCGCAC TTGTAAGGCTTTTGCTTGGCACAGTAAACAGCATTTCCAATTGCGCCTTCCTTGTTCATGGCCGCGACATCGGCCAGGTGTTACGAAACTCGTGGGAGGA GTGGTTGGTGAAATGGCAAGTGGAAGGCGACATATCAGTTGGAGAGGCAGAGTTGGTGGTCAAGACAATGAGACTGATGACCACTGCTGATTATGGTTTG ATGAACAATTCCAACGAATTAGATCCTCTGTTCGAGCAACTCGCCAATCTCACCAACAAAGTTTGCCATCAACTTGCCCATTTCCGCAACACCGGGGTTG GAGATAACACTTGCTGTCTGAGAACAACGAACGTGGAAATCGAGACTGGAATGCAGGAACTGGTTCGAATAGTAACACAGAAGACTGTAGGTGGTAGTGA AGAAGAAGAGGAAGCGATTCGTCAATCGAAGCAGAGATTCTTTGATGTGGCCAAGACTTTCTACTATACTGCTACTTGTGACATGTCGACCATTGATCAT CACATTTCGAAAGTCCTCTTCGAGACAGTCTAA
AA sequence Show only first row Show all	>Lus10004323 pacid=23161752 polypeptide=Lus10004323 locus=Lus10004323.g ID=Lus10004323.BGIv1.0 annot-version=v1.0 MASLIHRATTVASSCSPVLKQASTWSSVDLSPWFFPSQGYVAPKYQKFEVNIGLTRCNVISKSPTQDRNLNQGASLHEIAKEDAHIEPEANLKVAISNVT NELVKTIKSMLSSMEDGETNASPYDTAWLALVKDANDCTRPRFPETLEWIANNQLPDGSWGDADIFLAHDRMLNTLACVIALTTWNVHSDKCQLGLKFFN ENLRRLEDENVTHMPIGFEVVFPKLLELADGLDLEVDPDHSPVLQQIYAAGSLKLKRIPKDILHKFPTTLLYSLEGMGGLDWEKLLKFQNEDGSFLFSPA STAYALSQTNDQKCFEYLSKIADKFQGGVPNVYPVDLFENIWAIDRLQRLGISRFFQPEIRKCLDYIEKFWDEKGIAWASKSRLHDVDVTAMGFRILRMH GRPVSPDVFNNFEKDGGLFCLVGQSGHTTTELFNVYRASQMLFPGEQIMENAKHGAYNLLRKKQASNELFDKWIITKDLPGEVGYALDVPFYASLSRLES RFFIEHYGGDEDVWIGKTLYRMYFVNNNEYLELAKIDYNNCQALHRMEWDNLQKWYEEHGMRGFGLSEERLLFRYYLAAATVFEQNRSEERMAWAKTTAL LEVIDNNNNSKDQRAGFVHEFTTRDIDGLEASALVRLLLGTVNSISNCAFLVHGRDIGQVLRNSWEEWLVKWQVEGDISVGEAELVVKTMRLMTTADYGL MNNSNELDPLFEQLANLTNKVCHQLAHFRNTGVGDNTCCLRTTNVEIETGMQELVRIVTQKTVGGSEEEEEAIRQSKQRFFDVAKTFYYTATCDMSTIDH HISKVLFETV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G02780		ATCPS1, ABC33, ...	GA REQUIRING 1, CPP synthase, ...		Lus10004323 [exp]	0	1
AT1G05675			UDP-Glycosyltransferase superf...		Lus10010469 [exp]	1.4	0.9631
					Lus10016118 [exp]	2.0	0.9631
					Lus10026491 [exp]	2.4	0.7781
AT5G17540			HXXXD-type acyl-transferase fa...		Lus10005660 [exp]	3.0	0.8850
AT5G39300		ATHEXPALPHA1.18...	EXPANSIN 25, expansin A25 (.1)		Lus10000305 [exp]	3.9	0.8676
AT3G07880		SCN1	SUPERCENTIPEDE1, Immunoglobuli...		Lus10027327 [exp]	4.0	0.8796
AT5G17200			Pectin lyase-like superfamily ...		Lus10014826 [exp]	4.2	0.7522
AT5G23540			Mov34/MPN/PAD-1 family protein...		Lus10012493 [exp]	5.5	0.7478
AT5G06700		TBR	TRICHOME BIREFRINGENCE, Plant ...		Lus10033616 [exp]	6.5	0.7653
AT2G14378			Protein of unknown function (D...		Lus10019428 [exp]	7.7	0.6595

Compare expression of checked genes

Lus10004323 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.