Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G22756 330 / 4e-114 ATSMO1-2, ATSMO1, SMO1-2 sterol C4-methyl oxidase 1-2 (.1) AT4G22753 326 / 1e-112 ATSMO1-3, ATSMO1, SMO1-3 sterol 4-alpha methyl oxidase 1-3 (.1.2) AT4G12110 324 / 5e-112 ATSMO1-1, SMO1-1 sterol-4alpha-methyl oxidase 1-1 (.1) AT1G07420 207 / 2e-66 SMO2-1, ATSMO1, ATSMO2-2, SMO2-2 Arabidopsis thaliana sterol 4-alpha-methyl oxidase 1, sterol 4-alpha-methyl-oxidase 2-1 (.1.2) AT2G29390 198 / 7e-63 ATSMO2-2, SMO2-2, ATSMO2, SMO2-1 Arabidopsis thaliana sterol 4-alpha-methyl-oxidase 2-2, sterol 4-alpha-methyl-oxidase 2-2 (.1.2.3.4.5) AT1G14290 67 / 1e-12 SBH2 sphingoid base hydroxylase 2 (.1) AT1G69640 61 / 1e-10 SBH1 sphingoid base hydroxylase 1 (.1) AT3G02590 52 / 1e-07 Fatty acid hydroxylase superfamily protein (.1) AT3G02580 42 / 0.0003 BUL1, DWF7, STE1 DWARF 7, BOULE 1, sterol 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032193 [exp] 366 / 3e-128 AT4G12110 483 / 4e-174 sterol-4alpha-methyl oxidase 1-1 (.1) Lus10024555 [exp] 352 / 5e-123 AT4G12110 442 / 1e-158 sterol-4alpha-methyl oxidase 1-1 (.1) Lus10004322 [exp] 347 / 7e-121 AT4G12110 357 / 2e-124 sterol-4alpha-methyl oxidase 1-1 (.1) Lus10004321 [exp] 332 / 3e-115 AT4G12110 422 / 2e-150 sterol-4alpha-methyl oxidase 1-1 (.1) Lus10028908 [exp] 258 / 5e-86 AT4G22756 288 / 2e-97 sterol C4-methyl oxidase 1-2 (.1) Lus10040739 [exp] 194 / 4e-61 AT2G29390 454 / 5e-164 Arabidopsis thaliana sterol 4-alpha-methyl-oxidase 2-2, sterol 4-alpha-methyl-oxidase 2-2 (.1.2.3.4.5) Lus10016492 [exp] 194 / 7e-61 AT1G07420 463 / 3e-167 Arabidopsis thaliana sterol 4-alpha-methyl oxidase 1, sterol 4-alpha-methyl-oxidase 2-1 (.1.2) Lus10001556 [exp] 189 / 4e-59 AT1G07420 458 / 3e-165 Arabidopsis thaliana sterol 4-alpha-methyl oxidase 1, sterol 4-alpha-methyl-oxidase 2-1 (.1.2) Lus10004988 [exp] 96 / 5e-24 AT1G07420 206 / 5e-68 Arabidopsis thaliana sterol 4-alpha-methyl oxidase 1, sterol 4-alpha-methyl-oxidase 2-1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G116500 [exp] 343 / 2e-119 AT4G12110 439 / 1e-156 sterol-4alpha-methyl oxidase 1-1 (.1) Potri.003G116000 [exp] 341 / 2e-118 AT4G12110 448 / 3e-160 sterol-4alpha-methyl oxidase 1-1 (.1) Potri.014G069500 [exp] 296 / 1e-100 AT4G12110 403 / 2e-142 sterol-4alpha-methyl oxidase 1-1 (.1) Potri.001G245300 [exp] 194 / 4e-61 AT1G07420 476 / 2e-172 Arabidopsis thaliana sterol 4-alpha-methyl oxidase 1, sterol 4-alpha-methyl-oxidase 2-1 (.1.2) Potri.009G037400 [exp] 191 / 6e-60 AT1G07420 470 / 5e-170 Arabidopsis thaliana sterol 4-alpha-methyl oxidase 1, sterol 4-alpha-methyl-oxidase 2-1 (.1.2) Potri.002G061400 [exp] 66 / 2e-12 AT1G69640 311 / 1e-107 sphingoid base hydroxylase 1 (.1) Potri.005G200000 [exp] 54 / 1e-08 AT1G69640 315 / 7e-109 sphingoid base hydroxylase 1 (.1) Potri.017G116600 [exp] 42 / 0.0002 AT3G02580 455 / 1e-163 DWARF 7, BOULE 1, sterol 1 (.1) Potri.004G097500 [exp] 40 / 0.0006 AT3G02580 464 / 3e-167 DWARF 7, BOULE 1, sterol 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04116 [flax] [poplar] FA_hydroxylase Fatty acid hydroxylase superfamily
Representative CDS sequence Show only first row Show all	>Lus10004324 pacid=23161722 polypeptide=Lus10004324 locus=Lus10004324.g ID=Lus10004324.BGIv1.0 annot-version=v1.0 ATGCTGCCGTACAACTCCATCCAGGAGGCTGCGCCCCAACTTGGCCGGAACCTGACATACGCCGAGACCCTCTGGTTCGATTACTCTTCCGACAAGTCCG ATTTCTTCCTCTACAACCACGTCACTATCCTTGTATTCCTCGTCTTCACGTTCGTTTCCGTCCCGATGATCTTCTTCCAACAATTCGCGTTTTTAGACAA GTACAGGATTCAGCGGAAAGCCCGCCTCTCCTCCGCCGAGATACTCAAGTGCTACAAGAGTGGCGCGCTCACTTACTTATTCGTTGTGCTCCCCATCGGG CTCGCCTCCTATCCTGTCTTAAAAATGGTTGGAACTCGGACGGGCATCACGCTGCCGACACGATGGGAAATAGCGGCGCAGATTCTGGTATACTTCGTCG TCGAGGATTACATGAGCTACTGGATACACAGGGGTCTTCATTGTAGATGGTTATACAAGAAGGTTCACGAGCTCCATCACGAATTCACTGCTCCGGTCGC GATTGGCGCGGTGTACGGTCACTGGATTGATACGGTGGTGCTCGGAATCCCTTCCTTTGTGGGGCCGGCGATGGTTCCAGGACACGTGGTAACCCTTTGG TTGTGGTTTTCTGTACGCCAGCTGGAGGCACTCGGAACCCACAGCGGGTATGATTTTCCGTGGGATGTCAACAAATACATACCGTTTTACGGGGGAGCGG AATTCCATGATTATCATCACTATGTCGGTGGCCAAAGTCGTAGCAACTTTGCTTCGGTGTTCACGTATTGTGATTACATTTACGGAACCGACAAGGTATA G
AA sequence Show only first row Show all	>Lus10004324 pacid=23161722 polypeptide=Lus10004324 locus=Lus10004324.g ID=Lus10004324.BGIv1.0 annot-version=v1.0 MLPYNSIQEAAPQLGRNLTYAETLWFDYSSDKSDFFLYNHVTILVFLVFTFVSVPMIFFQQFAFLDKYRIQRKARLSSAEILKCYKSGALTYLFVVLPIG LASYPVLKMVGTRTGITLPTRWEIAAQILVYFVVEDYMSYWIHRGLHCRWLYKKVHELHHEFTAPVAIGAVYGHWIDTVVLGIPSFVGPAMVPGHVVTLW LWFSVRQLEALGTHSGYDFPWDVNKYIPFYGGAEFHDYHHYVGGQSRSNFASVFTYCDYIYGTDKV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G22756		ATSMO1-2, ATSMO...	sterol C4-methyl oxidase 1-2 (...		Lus10004324 [exp]	0	1
AT3G01140	MYB	NOK, ATMYB106	NOECK, myb domain protein 106 ...		Lus10019086 [exp]	1.7	0.9820
AT1G17260		AHA10	autoinhibited H\(+\)-ATPase is...		Lus10037466 [exp]	15.9	0.9680
AT5G47840		AMK2	adenosine monophosphate kinase...		Lus10009478 [exp]	17.1	0.8741
AT4G36250		ALDH3F1	aldehyde dehydrogenase 3F1 (.1...		Lus10031280 [exp]	17.5	0.9784
AT3G28910	MYB	AtMYB30, MYB30	myb domain protein 30 (.1)		Lus10015369 [exp]	19.8	0.9266
AT4G37320		CYP81D5	"cytochrome P450, family 81, s...		Lus10024819 [exp]	20.0	0.9227
					Lus10013528 [exp]	21.1	0.9782
AT2G45970		CYP86A8, LCR	LACERATA, "cytochrome P450, fa...		Lus10018830 [exp]	23.4	0.9398
AT4G03390		SRF3	STRUBBELIG-receptor family 3 (...		Lus10031628 [exp]	24.1	0.9280
					Lus10010593 [exp]	25.2	0.9768

Compare expression of checked genes

Lus10004324 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.