Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G62870 912 / 0 unknown protein AT1G12380 902 / 0 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024556 [exp] 780 / 0 AT1G12380 797 / 0.0 unknown protein Lus10032194 [exp] 776 / 0 AT1G12380 788 / 0.0 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G116600 [exp] 993 / 0 AT1G62870 1017 / 0.0 unknown protein Potri.003G115900 [exp] 989 / 0 AT1G62870 1028 / 0.0 unknown protein Potri.015G130800 [exp] 828 / 0 AT1G12380 899 / 0.0 unknown protein Potri.012G129100 [exp] 819 / 0 AT1G12380 890 / 0.0 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10004325 pacid=23161728 polypeptide=Lus10004325 locus=Lus10004325.g ID=Lus10004325.BGIv1.0 annot-version=v1.0 ATGGCGGCGACCAGTAACAACACAGCCTCTGCTACCGCCGCCGCGAGTGACGAGACGGCGGCGAAGGCGGCGCAGAAGAGGTACGAAGGGCTTGTGATGG TCAGGAACAAGGCGATAAAGGGGAAAGGGGCGTGGTATTGGGCTCACTTGGAGCCGTTACTTGTACACAACGCCGACACCGGACTACCCAAAGCGGTCAA GCTCCGGTGCTCCTTATGCGACGCCGTTTTCTCCGCCTCCAACCCATCCCGCACAGCCTCCGAGCACCTCAAGCGCGGGACTTGCCCCAATTTCAACGCC TCCATTCCAAAACCCATTTACTCAATCTCCCCTTCTCCTCCTCCTCCTCCGTCGTCGTCAACCTTCAGCCGGAAGCGCTCTGCCGTTTCTTCTCCAAGTC CGCTCACCGTCGTCGATCCTTCGCGGTTCTCTGGCGAGGCAGCGGCCCCATTGCCGCACCACCACTACCACCACCACCACCAGCATTTGGTGCTCTCCGG CGGGAAAGACGATTTGGGCCATCTGGCAATGTTGGAGGACAGTGTCAAGAAGCTTAAAAGCCCCAAGACTTCTCCCGGGCCGGCGCTGAGCAAAACCCAA ATCGAGTGCGCCGTCGACCATTTAGCCGATTGGGTCTACGAATCGTGCGGCTCCGTCTCCTTCTCCAGCCTGGAGCATCCAAAGTTCCGAGCTTTTCTCC ACCAAGTGGGACTCCCGGCGGTTTCCAAGAGGGATTTGGCCGGAGGGAGACTTGACGTCAAGTTCGAGGTCGCAAAAGCAGAGTCGGAGTCGAGGATTCG AGACGCAATGTTCTTCCAGGTTTCTTCCGACGGCTGGAAATCCGGAGAACCCAATTTGGTCAATTTGGCAGTGAATTTGCCCAACGGGACGAGTGTTTAC CGTCGTGCTGTATTCGTGACCGGTTCGGTCGGTTCGACGTATGCAGAGGATGTTCTTTGGGATACAGTAAAAGGAATCTGCGGCAATTTCGTCCAACAAT GTGCTGGAATCGTAGCAGACAGGTTTAAGGCCAAGGCATTGAGGAATTTGGAGAATCAGCATCACTGGATGGTTAATCTCTGCTGTCAACTTCAAGGGTT CAAGAGTTTGATCAAGGATTTAACCAAAGAGCTTCCTTTAGTCAAATCCGTTTCCGAGAATTGCTACAAATTGGCAAATGTGTTCAACAACAGAACACAG TTTAGGAACAGCTTGAACAAGTATCAGTTGCAGGAGTATGGCTACTCAGGAGGGTTGATAAGGGTTCCGTTTTCGAATGTCGATTTCATGTCTGTCTTCT CGATGATTGATGATGTGTTGAGCAATGCCAGGGCAGTACAGTTGGTTATCCAGGTGGACGAATCCTTGTCCGTTGAAGAAGAAGAACCTGAAGCAAGGGA AGTTGCTGAGATGGTCGAGGATGGCGGGTTCTGGAACGAATTGGAGGCGGTACATTCACTGGTGAAGATGATTTCAGACATGATTCAAGAGATCGAGTCG GAGAGGCCGTTGTTGGGACAATGCTTGCCACTCTGGGAAGGGCTGGGAGCGAAAGTGAAGGACTGGTGTGCGAAATTCGGCATCGGAGGAGAGGTGGGAT TGATGGCCGAGAAAGTGATCGAAAGGCGATTCGAGAAGAACTATCATCCAGCAATGGCTGCCGCATACATACTTGATCCACTCTACTTGGTGAGGGGCAC AAGTGGGAAGTACTTACCACCGTTCAAGTATTTGACTCCAGAGCAAGAGAAAGATGTGGACAGGCTGATAACCCGACTGGTTTCGAGGGAGGAAGCTCAC ATCGCGTTGATGGAGTTGATGAAATGGAGAACCGAAGGGCTCGATCCAGTGTATGCAAGAGCCGTGCAGATGAAGCAGAGGGATTCTGTTACGGGGAAGA TGAGGCTTTCGAATCCGCAAAGCAGTCGGCTTGTCTGGGAGACTTATCTTACCGAGTTCAAGTCGTTAGGGAAAGTTGCAGTGAGGCTGATTTTCTTGCA CGCCACGGCCTGTGGGTTCAAATGCAATGTAAACTTGTTGAGATTGGTTAGCAGTGGACATGGTGGCAGCCAGTCTAGAGCGGCAATCGACAAGGCCGAG AAGCTGGTGTTCATCGCGGCTCATTCGAAGCTCGAAAGAAGGCGCGACTTTTCGAGCGAGGAAGATAAAGATGCAGAGCTTTTGGCTATGGGGAATGAAG AGGATGATGTGCTGAATGAAGTTCTTGCTGATACTTCCTCAGTGTAA
AA sequence Show only first row Show all	>Lus10004325 pacid=23161728 polypeptide=Lus10004325 locus=Lus10004325.g ID=Lus10004325.BGIv1.0 annot-version=v1.0 MAATSNNTASATAAASDETAAKAAQKRYEGLVMVRNKAIKGKGAWYWAHLEPLLVHNADTGLPKAVKLRCSLCDAVFSASNPSRTASEHLKRGTCPNFNA SIPKPIYSISPSPPPPPSSSTFSRKRSAVSSPSPLTVVDPSRFSGEAAAPLPHHHYHHHHQHLVLSGGKDDLGHLAMLEDSVKKLKSPKTSPGPALSKTQ IECAVDHLADWVYESCGSVSFSSLEHPKFRAFLHQVGLPAVSKRDLAGGRLDVKFEVAKAESESRIRDAMFFQVSSDGWKSGEPNLVNLAVNLPNGTSVY RRAVFVTGSVGSTYAEDVLWDTVKGICGNFVQQCAGIVADRFKAKALRNLENQHHWMVNLCCQLQGFKSLIKDLTKELPLVKSVSENCYKLANVFNNRTQ FRNSLNKYQLQEYGYSGGLIRVPFSNVDFMSVFSMIDDVLSNARAVQLVIQVDESLSVEEEEPEAREVAEMVEDGGFWNELEAVHSLVKMISDMIQEIES ERPLLGQCLPLWEGLGAKVKDWCAKFGIGGEVGLMAEKVIERRFEKNYHPAMAAAYILDPLYLVRGTSGKYLPPFKYLTPEQEKDVDRLITRLVSREEAH IALMELMKWRTEGLDPVYARAVQMKQRDSVTGKMRLSNPQSSRLVWETYLTEFKSLGKVAVRLIFLHATACGFKCNVNLLRLVSSGHGGSQSRAAIDKAE KLVFIAAHSKLERRRDFSSEEDKDAELLAMGNEEDDVLNEVLADTSSV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G62870			unknown protein		Lus10004325 [exp]	0	1
AT5G20070		ATNUDX19, ATNUD...	ARABIDOPSIS THALIANA NUDIX HYD...		Lus10014493 [exp]	1.0	0.9271
AT4G20270		BAM3	BARELY ANY MERISTEM 3, Leucine...		Lus10038382 [exp]	2.0	0.9163
AT5G44070		ATPCS1, ARA8, C...	CADMIUM SENSITIVE 1, ARABIDOPS...		Lus10003622 [exp]	2.4	0.9114
AT1G05200		GLUR3, ATGLR3.4	glutamate receptor 3.4 (.1.2)		Lus10027171 [exp]	2.8	0.8781
AT5G62620			Galactosyltransferase family p...		Lus10037238 [exp]	4.6	0.8740
AT4G29720		ATPAO5	polyamine oxidase 5 (.1)		Lus10040559 [exp]	7.3	0.8659
AT1G74720		QKY	QUIRKY, C2 calcium/lipid-bindi...		Lus10033097 [exp]	7.3	0.8747
AT5G61760		ATIPK2BETA	ARABIDOPSIS THALIANA INOSITOL ...		Lus10020535 [exp]	8.4	0.8751
AT4G29720		ATPAO5	polyamine oxidase 5 (.1)		Lus10040558 [exp]	8.8	0.8606
AT5G37020	ARF	ARF8, ATARF8	auxin response factor 8 (.1.2)		Lus10033598 [exp]	9.4	0.8738

Compare expression of checked genes

Lus10004325 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.