Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G62750 1318 / 0 ATSCO1, ATSCO1/CPEF-G SNOWY COTYLEDON 1, Translation elongation factor EFG/EF2 protein (.1) AT2G45030 590 / 0 Translation elongation factor EFG/EF2 protein (.1) AT1G45332 589 / 0 Translation elongation factor EFG/EF2 protein (.1) AT1G56070 164 / 1e-41 LOS1, AT1G56075.1 LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 1, Ribosomal protein S5/Elongation factor G/III/V family protein (.1) AT3G12915 130 / 3e-31 Ribosomal protein S5/Elongation factor G/III/V family protein (.1.2) AT2G31060 107 / 9e-24 EMB2785 EMBRYO DEFECTIVE 2785, elongation factor family protein (.1.2.3) AT5G13650 102 / 3e-22 SVR3 SUPPRESSOR OF VARIEGATION 3, elongation factor family protein (.1.2) AT3G22980 99 / 4e-21 Ribosomal protein S5/Elongation factor G/III/V family protein (.1) AT5G39900 92 / 7e-19 Small GTP-binding protein (.1) AT5G08650 89 / 5e-18 Small GTP-binding protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028909 [exp] 1514 / 0 AT1G62750 1334 / 0.0 SNOWY COTYLEDON 1, Translation elongation factor EFG/EF2 protein (.1) Lus10018604 [exp] 593 / 0 AT2G45030 1343 / 0.0 Translation elongation factor EFG/EF2 protein (.1) Lus10039840 [exp] 569 / 0 AT2G45030 1289 / 0.0 Translation elongation factor EFG/EF2 protein (.1) Lus10031186 [exp] 103 / 5e-23 AT1G56070 902 / 0.0 LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 1, Ribosomal protein S5/Elongation factor G/III/V family protein (.1) Lus10007535 [exp] 100 / 1e-21 AT5G13650 1121 / 0.0 SUPPRESSOR OF VARIEGATION 3, elongation factor family protein (.1.2) Lus10039896 [exp] 100 / 2e-21 AT2G31060 976 / 0.0 EMBRYO DEFECTIVE 2785, elongation factor family protein (.1.2.3) Lus10031185 [exp] 96 / 2e-21 AT1G56070 504 / 6e-175 LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 1, Ribosomal protein S5/Elongation factor G/III/V family protein (.1) Lus10004749 [exp] 100 / 3e-21 AT3G22980 1376 / 0.0 Ribosomal protein S5/Elongation factor G/III/V family protein (.1) Lus10002179 [exp] 99 / 3e-21 AT2G31060 1036 / 0.0 EMBRYO DEFECTIVE 2785, elongation factor family protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G113500 [exp] 1344 / 0 AT1G62750 1310 / 0.0 SNOWY COTYLEDON 1, Translation elongation factor EFG/EF2 protein (.1) Potri.001G123600 [exp] 594 / 0 AT1G45332 1337 / 0.0 Translation elongation factor EFG/EF2 protein (.1) Potri.003G109900 [exp] 585 / 0 AT1G45332 1330 / 0.0 Translation elongation factor EFG/EF2 protein (.1) Potri.013G123700 [exp] 105 / 4e-23 AT2G31060 1084 / 0.0 EMBRYO DEFECTIVE 2785, elongation factor family protein (.1.2.3) Potri.006G053000 [exp] 102 / 4e-22 AT5G13650 1123 / 0.0 SUPPRESSOR OF VARIEGATION 3, elongation factor family protein (.1.2) Potri.007G065600 [exp] 100 / 3e-21 AT1G56070 1620 / 0.0 LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 1, Ribosomal protein S5/Elongation factor G/III/V family protein (.1) Potri.007G065700 [exp] 99 / 3e-21 AT1G56070 1623 / 0.0 LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 1, Ribosomal protein S5/Elongation factor G/III/V family protein (.1) Potri.005G098100 [exp] 99 / 4e-21 AT1G56070 1648 / 0.0 LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 1, Ribosomal protein S5/Elongation factor G/III/V family protein (.1) Potri.009G152500 [exp] 99 / 6e-21 AT3G22980 1521 / 0.0 Ribosomal protein S5/Elongation factor G/III/V family protein (.1) Potri.001G305300 [exp] 92 / 4e-19 AT5G08650 1063 / 0.0 Small GTP-binding protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0575 [flax] [poplar] EFTPs PF03144 [flax] [poplar] GTP_EFTU_D2 Elongation factor Tu domain 2 CL0437 [flax] [poplar] EF-G_C PF00679 [flax] [poplar] EFG_C Elongation factor G C-terminus CL0329 [flax] [poplar] S5 PF03764 [flax] [poplar] EFG_IV Elongation factor G, domain IV CL0023 [flax] [poplar] P-loop_NTPase PF00009 [flax] [poplar] GTP_EFTU Elongation factor Tu GTP binding domain
Representative CDS sequence Show only first row Show all	>Lus10004326 pacid=23161727 polypeptide=Lus10004326 locus=Lus10004326.g ID=Lus10004326.BGIv1.0 annot-version=v1.0 ATGGCGGCAGAGACAGTTCGACTGGCGGTCTCAGCTTCTTCTTCTTCACTCAGCTCCTTCCATGGCTGTCAGCGGAAGTCAAAATCCCTGTCCTCTCCAG TTCGGTTTCAGGGGCTCTCTCGGCCTTCAATTTCCTCCTCCTTCTCTCACTTTCTCGGAAGCCATCGCGTCGCCGCCAAATTCTCCGTTCCACGCCATTC CCTGCAGAGGAAGCGGAGTAGCTTATCCGTCTTCGCCTTGGCTGCCGAAGATGGCAACCGTGTTGTGCCACTGAAGGACTACCGGAACATCGGAATCATG GCTCACATTGACGCAGGGAAGACTACCACGACCGAGAGGGTACTCTTCTACACAGGCAGAAACTACAAAATCGGCGAAGTCCACGAAGGAACAGCTACGA TGGATTGGATGGAACAGGAGCAAGAAAGAGGGATAACCATTACTTCAGCTGCCACCACCACCTTCTGGAACAAGCATCGTATCAACATCATCGACACTCC TGGCCATGTGGACTTCACCCTTGAGGTGGAACGTGCTCTCCGAGTTTTGGACGGTGCCATCTGCTTGTTCGACAGTGTTGCTGGTGTGGAGCCACAATCG GAGACTGTGTGGAGGCAGGCGGATAAATACGGGGTTCCCAGAATTTGCTTTGTCAATAAGATGGATAGGCTCGGAGCGAACTTTTTCCGGACTAGAGACA TGATCATAACTAACTTGGGTGCTAAACCTCTTGTTATTCAAGTTCCTATTGGTTCCGAAGATAACTTTAAAGGTGTGGTTGATCTAGTGAGGATGAAGGC TATTGTTTGGTCAGGAGAAGAATTGGGTGCCAAGTTTGCGTACGAAGACATTCCGACTGATCTTGAAGAATTGGCTCAGGATTACCGAGCACAGATGATA GAGACCATTGTCGATTTGGACGACGAAGCTATGGAAAACTATCTAGAAGGAATAGAGCCTGAAGAGGAAGCTATCAAGAAACTTATCCGGAAAGGAACTA TCGGGGGCAACTTCGTCCCGGTGTTGTGTGGCTCGGCTTTCAAGAACAAGGGAGTGCAGCCATTGCTTGATGCAGTTGTTGACTATCTCCCTTCCCCGAT TGAGGTTCCGCCGATGAAAGGGACCGATCCTGAGAACCCTGAAATCACGATCGAAAGGTCCCCCAGCGACAACGAACCCTTTTCCGGCCTGGCATTTAAG ATCATGAACGATCCATTTGTCGGTTCCCTTACATTCGTAAGAGTGTATTCAGGGAAACTCGCAGCTGGATCTTATGTGTTGAATGCAAACAAGGGGAAGA AAGAGAGAATTGGCAGGCTTCTCGAAATGCATGCCAACAGTAGAGAGGATGTTAAAGTGGCCGTAACGGGAGATATTGTTGCTCTTGCAGGACTGAAGGA CACCATAACTGGCGAAACATTGTGCGATGTGGATAATTCGGTTGTGCTTGAACGGATGGATTTCCCCGACCCTGTCATCAAAGTTGCAATTGAACCAAAA ACCAAGGCTGATATTGACAAGATGGCTACAGGTTTGATCAAGCTCGCTCAAGAAGATCCTTCTTTCCACTTTTCGCGTGACGATGAAACCAACCAGACCG TGATTGAAGGAATGGGAGAGTTGCATCTCGAGATCATCGTCGACCGTCTGAAAAGAGAATTCAAGGTGGAAGCCAATGTTGGTGCACCACAAGTGAACTA CCGTGAGAGCATTAGCAGAATAGCAGAAGTGAAGTATGTGCACAAGAAGCAATCAGGTGGGCAAGGACAGTTTGCTGATATAACTGTACGATTCGAGCCC ATGGAGGCTGGTTCAGGGTACGAGTTCAAGAGCGAGATCAAGGGAGGAACGGTGCCTAGGGAATACATTCCCGGAGTAATGAAAGGACTTGAAGAATGTA TGAGCAACGGAGTTTTGGCCGGTTTCCCTGTGGTTGATGTCCGTGCTGTGTTGGTTGATGGTTCGTACCACGATGTCGATTCAAGTGTGCTGGCCTTCCA GCTTGCGGCTAGAGGAGCGTTCAGAGAAGGGATTAGGAAAGCCGCTCCGAAGATGCTGGAACCGATAATGAAGGTTGAAGTCGTAACCCCCGAGGAACAC CTGGGGGATGTGATTGGTGATCTTAACTCCAGGAGAGGTCAGATTAATACCTTTACTGACAAACCTGGTGGCCTCAAGGTGGTGGATGCGCTTGTGCCAT TGGCGGAGATGTTCCAGTACGTGAGTACGTTAAGAGGAACCACGAAAGGGAGAGCTTCGTACACGATGCAGTTGGCTAAGTTCGATGTTGTGCCTCAGCA TATTCAGAACCAGCTTGCTTCTAAAGAGCAGGAAGTTGCTGCTTGA
AA sequence Show only first row Show all	>Lus10004326 pacid=23161727 polypeptide=Lus10004326 locus=Lus10004326.g ID=Lus10004326.BGIv1.0 annot-version=v1.0 MAAETVRLAVSASSSSLSSFHGCQRKSKSLSSPVRFQGLSRPSISSSFSHFLGSHRVAAKFSVPRHSLQRKRSSLSVFALAAEDGNRVVPLKDYRNIGIM AHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTFWNKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQS ETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIITNLGAKPLVIQVPIGSEDNFKGVVDLVRMKAIVWSGEELGAKFAYEDIPTDLEELAQDYRAQMI ETIVDLDDEAMENYLEGIEPEEEAIKKLIRKGTIGGNFVPVLCGSAFKNKGVQPLLDAVVDYLPSPIEVPPMKGTDPENPEITIERSPSDNEPFSGLAFK IMNDPFVGSLTFVRVYSGKLAAGSYVLNANKGKKERIGRLLEMHANSREDVKVAVTGDIVALAGLKDTITGETLCDVDNSVVLERMDFPDPVIKVAIEPK TKADIDKMATGLIKLAQEDPSFHFSRDDETNQTVIEGMGELHLEIIVDRLKREFKVEANVGAPQVNYRESISRIAEVKYVHKKQSGGQGQFADITVRFEP MEAGSGYEFKSEIKGGTVPREYIPGVMKGLEECMSNGVLAGFPVVDVRAVLVDGSYHDVDSSVLAFQLAARGAFREGIRKAAPKMLEPIMKVEVVTPEEH LGDVIGDLNSRRGQINTFTDKPGGLKVVDALVPLAEMFQYVSTLRGTTKGRASYTMQLAKFDVVPQHIQNQLASKEQEVAA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G62750		ATSCO1, ATSCO1/...	SNOWY COTYLEDON 1, Translation...		Lus10004326 [exp]	0	1
AT5G50920		CLPC1, CLPC, AT...	HEAT SHOCK PROTEIN 93-V, DE-RE...		Lus10043197 [exp]	1.4	0.9037
AT4G30825			Tetratricopeptide repeat (TPR)...		Lus10035818 [exp]	1.7	0.8970
AT2G41680		NTRC	NADPH-dependent thioredoxin re...		Lus10018051 [exp]	2.2	0.8841
AT3G25410			Sodium Bile acid symporter fam...		Lus10038237 [exp]	3.3	0.9121
AT1G76730			NagB/RpiA/CoA transferase-like...		Lus10028565 [exp]	5.3	0.8864
AT1G09900			Pentatricopeptide repeat (PPR-...		Lus10015113 [exp]	5.3	0.8759
AT2G23390			unknown protein		Lus10038137 [exp]	12.2	0.8779
AT2G23600		ATMES2, ACL, AT...	ARABIDOPSIS THALIANA METHYL ES...		Lus10015532 [exp]	13.0	0.7901
AT2G17972			unknown protein		Lus10013879 [exp]	15.3	0.8670
AT3G56040		UGP3	UDP-glucose pyrophosphorylase ...		Lus10007512 [exp]	16.1	0.8205

Compare expression of checked genes

Lus10004326 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.