Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G62760 158 / 2e-47 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT4G25260 137 / 2e-40 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT5G62360 127 / 2e-36 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT1G14890 123 / 1e-34 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT5G62350 115 / 6e-32 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT3G47380 112 / 2e-30 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT2G01610 111 / 4e-30 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT5G51520 110 / 7e-30 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT4G25250 108 / 2e-29 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT1G62770 101 / 2e-26 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028910 [exp] 333 / 3e-117 AT1G62760 169 / 1e-51 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Lus10024595 [exp] 187 / 1e-59 AT1G62760 141 / 6e-41 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Lus10032232 [exp] 182 / 5e-58 AT1G62760 141 / 9e-41 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Lus10038915 [exp] 133 / 9e-39 AT5G62360 174 / 5e-55 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Lus10031138 [exp] 130 / 1e-37 AT5G62360 172 / 3e-54 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Lus10031711 [exp] 123 / 7e-35 AT5G62360 145 / 4e-44 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Lus10027199 [exp] 120 / 1e-33 AT5G62360 169 / 3e-53 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Lus10031133 [exp] 119 / 2e-33 AT5G62350 211 / 8e-70 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Lus10031713 [exp] 119 / 3e-33 AT5G62350 202 / 4e-66 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G119300 [exp] 172 / 3e-54 AT1G62760 167 / 3e-51 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Potri.003G113600 [exp] 166 / 1e-51 AT1G62760 171 / 1e-52 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Potri.015G128100 [exp] 138 / 7e-41 AT5G62360 221 / 1e-73 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Potri.015G128300 [exp] 135 / 8e-40 AT5G62360 192 / 1e-62 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Potri.012G127400 [exp] 134 / 3e-39 AT4G25250 150 / 7e-46 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Potri.015G128200 [exp] 134 / 3e-39 AT5G62360 172 / 1e-54 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Potri.015G128700 [exp] 130 / 7e-38 AT5G62350 221 / 7e-74 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Potri.012G127500 [exp] 128 / 5e-37 AT5G62350 220 / 2e-73 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Potri.003G113700 [exp] 121 / 4e-34 AT4G12390 178 / 1e-56 pectin methylesterase inhibitor 1 (.1) Potri.015G128900 [exp] 116 / 2e-32 AT4G25250 145 / 4e-44 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04043 [flax] [poplar] PMEI Plant invertase/pectin methylesterase inhibitor
Representative CDS sequence Show only first row Show all	>Lus10004327 pacid=23161747 polypeptide=Lus10004327 locus=Lus10004327.g ID=Lus10004327.BGIv1.0 annot-version=v1.0 ATGGGAACTTTGGCAGCAATTTTCTTTCTCTTCTTCCTTACCCAGACAATCATCACTCCAACCGCCGCAAACCCACCGCCGGAATCCTCCGGAAGGTTAA ACCCAGACGCGGAATTCATCAAAGCTTCTTGCAATTCAACCCTCTACCCTAATCGCTGCTACATAACCCTGTCCCCTTACGCCTCCGAAATCGGATCCGA CCCAAGGAAACTGTCCCTGAAAGCTCTCAACGTGACCTTAAAAGTCACGAATTCCGCTTCAAGGCTGATGAAGAGGATGTCCAGAATGAAAGGTCTGCAG CCCCGGATGGCGGCGGCGGTGGCAGACTGCGTGGAGGAGGTCGGCGACGCGGTGGAGGAGCTCGGGAACTCGGTCGCCGAGATGGGCGGGTCGTCGCCCA TTCAGGGACCCGACTTCTGCCGGATGATTTCCGATGTTCAGACTTGGGTCAGCGCGGCGGAAACCGACGATGACACCTGTACGGACGGGTTCGACGAGGA GCCGGCGGCGGCGGAGGAGGGGGAAAAGAGTTCGGTGGTGGTGAGTAGAAATGTGAAGAAGATAGTTGAGAGACACGTGGCGAGGATTTCTCGGTTTACT AGTAACGCTCTGGCTCTGGTGAATCTCTATGCTTCTTCTTCCGAATCTAGTCATGTTCCTTGTTGA
AA sequence Show only first row Show all	>Lus10004327 pacid=23161747 polypeptide=Lus10004327 locus=Lus10004327.g ID=Lus10004327.BGIv1.0 annot-version=v1.0 MGTLAAIFFLFFLTQTIITPTAANPPPESSGRLNPDAEFIKASCNSTLYPNRCYITLSPYASEIGSDPRKLSLKALNVTLKVTNSASRLMKRMSRMKGLQ PRMAAAVADCVEEVGDAVEELGNSVAEMGGSSPIQGPDFCRMISDVQTWVSAAETDDDTCTDGFDEEPAAAEEGEKSSVVVSRNVKKIVERHVARISRFT SNALALVNLYASSSESSHVPC

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G62760			Plant invertase/pectin methyle...		Lus10004327 [exp]	0	1
AT5G44005			unknown protein		Lus10003609 [exp]	2.4	0.8715
AT3G55370	DOF	OBP3, AtDof3. 6	OBF-binding protein 3 (.1.2.3)		Lus10016566 [exp]	4.0	0.8858
AT3G55370	DOF	OBP3, AtDof3. 6	OBF-binding protein 3 (.1.2.3)		Lus10005956 [exp]	7.1	0.8822
AT5G08391			Protein of unknown function (D...		Lus10032032 [exp]	9.8	0.8593
AT5G35740			Carbohydrate-binding X8 domain...		Lus10039059 [exp]	10.4	0.8809
AT1G70280			NHL domain-containing protein ...		Lus10032158 [exp]	10.6	0.8637
AT1G10380			Putative membrane lipoprotein ...		Lus10036687 [exp]	10.8	0.8828
AT4G05220			Late embryogenesis abundant (L...		Lus10006755 [exp]	12.4	0.8788
AT1G77690		LAX3	like AUX1 3 (.1)		Lus10028078 [exp]	12.6	0.8310
AT5G62670		AHA11	H\(+\)-ATPase 11, H\(+\)-ATPas...		Lus10003259 [exp]	12.8	0.7951

Compare expression of checked genes

Lus10004327 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.