Plant FIBer expression Database

Lus10004328 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G48620 84 / 3e-17 HON5 high mobility group A5 (.1)
AT3G18035 69 / 4e-12 HON4 winged-helix DNA-binding transcription factor family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10028911
[exp]
712 / 0 AT1G48620 128 / 4e-32 high mobility group A5 (.1)
Lus10024594
[exp]
270 / 4e-84 AT3G18035 132 / 3e-33 winged-helix DNA-binding transcription factor family protein (.1)
Lus10032231
[exp]
234 / 6e-71 AT1G48620 103 / 2e-23 high mobility group A5 (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.012G048500
[exp]
111 / 3e-26 AT1G14900 66 / 5e-12 high mobility group A (.1)
Potri.015G040200
[exp]
94 / 2e-20 AT1G48620 99 / 6e-22 high mobility group A5 (.1)
Potri.010G109600
[exp]
45 / 6e-05 AT1G14900 98 / 3e-25 high mobility group A (.1)
Potri.008G162300
[exp]
43 / 0.0001 AT2G30620 76 / 2e-17 winged-helix DNA-binding transcription factor family protein (.1.2)
Potri.017G129400
[exp]
42 / 0.0002 AT1G14900 102 / 2e-27 high mobility group A (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0123 HTH PF00538 Linker_histone linker histone H1 and H5 family
Representative CDS sequence
>Lus10004328 pacid=23161751 polypeptide=Lus10004328 locus=Lus10004328.g ID=Lus10004328.BGIv1.0 annot-version=v1.0
ATGGATCAGTATCACAGCTCTATACCGCAGTGGGCCCATCAACAGCCTCCCCCCACCGCCGCTCCTTACTCCGTCGCCGCTTTTCCATCGGTCACGGCGG
CTGTTCCTCCTTCTCCACCTAACCTCAACTATGCATCTCAACATCAACTTCCCAACTTCGCCGCAGCTGTACCAACTCCCCCGCCGCCGCCGCAGCCAAC
TGATCCTTCTCCAGCTCAAGCTCCGGAAGTCATTCAACAGCCACCTGGATTCAACACCGGCGACCCTATCCCTTCCTATGCACAGATGATCATCTCTGCG
CTTGCGGCTTTGAAAGAACCCGACGGCTCAAGCAAGAGGGCGATAACCAAGTACATCGACCATTTTTATCCTGGGCTTCTTCCTCCGGCTCTGTTGACCC
AGACTTTGCAGCAAATGAAGACTAATGGAATGCTTGTCATGGTTAAGAAATCTTACAAGCTCCCCGGGTCGGATTTCACTTCCAACGCCAACGACCTTCC
AGATCTGTCTGCCGATGTTCCCCACGATGCTTCGGTTCAGCCACTGCAACAACTGCCGCAGACCTCTGAATCAGGAGCAGCAGCAGAAGGGATAGTTTCT
TCTTCTGTTGCGCCTAAAAGAGGCCGTGGAAGGCCTCCAAAGCCTAAGCTTGATTCTGTACTCTCCAACGGCCACCAACCCCAACCCTTCATGGTCTCTC
AGGCGGAGACTGATACCTCTCTGCCACCTGGTTTTGCTCCCAACGGCCAGCCGACCAGTAATGACTCATCCTTACCCATTGCGGTGGACTTTAATGCTGA
CGTCGGAGCTCAGGCGGTTAATGTGCCAATTGGGTTAGCGGAGGAGACTAATGTTGTCAAGAGAAGGCCAGGGAGGCCTCCTAAGAAGTTACTAGGCATT
GAAAACAGCGGGATTGTGATTGGTAAGAGAGGAAGGGGGAGGCCTCCGATGAGTGGGTTGAAGAAGAGAAGTCCTGGAAGGCTGAGGAAGCCTAAGCCGA
AGACTGTGGCGGGTGTTTCCGGAGCGAATGGGCACAAGAGGCGCCCTGGACGCCCTCCCAAGAATAGCCAGGCAATTTCGGTGATGGTTCCCTATGATAC
AACTGGGGAAGCAATTCCACAAGAGAGTGCACCAAGGCCTAGGGGCCGCCCGAGGAAGGGTATGGGATCAATTGCTGCTGGTGTGGGCGTCGTTTTAGGG
CTCTCTGATAAGCTGTCAGGACTCACTCGGAATGGCAGCGATGGTGGTGGCATCGAGCCTAGGAGGTTTGAGAGGCCAGTTGGCCGTCCAAGGAAGTATG
CTGATGAATCAGGAACTGAATCAGACACAGAAGAAGATTTCAGGGAGAAACTCCAGTACCTTCAACAGCGGGTAAGGGCAATAGTTGCTGTGCTGAAGCC
GGAGCTGCCCAATGGGGCTCCAGAAACTGTAGTAGCGGCGGTTGGGGAACTGGAAATCTTGGCAGACCTTGACATCGACAAGCCAGTCCCAGCATCGACA
CTCAAAGCAGTCACTGCTCCAGGCAGTTGA
AA sequence
>Lus10004328 pacid=23161751 polypeptide=Lus10004328 locus=Lus10004328.g ID=Lus10004328.BGIv1.0 annot-version=v1.0
MDQYHSSIPQWAHQQPPPTAAPYSVAAFPSVTAAVPPSPPNLNYASQHQLPNFAAAVPTPPPPPQPTDPSPAQAPEVIQQPPGFNTGDPIPSYAQMIISA
LAALKEPDGSSKRAITKYIDHFYPGLLPPALLTQTLQQMKTNGMLVMVKKSYKLPGSDFTSNANDLPDLSADVPHDASVQPLQQLPQTSESGAAAEGIVS
SSVAPKRGRGRPPKPKLDSVLSNGHQPQPFMVSQAETDTSLPPGFAPNGQPTSNDSSLPIAVDFNADVGAQAVNVPIGLAEETNVVKRRPGRPPKKLLGI
ENSGIVIGKRGRGRPPMSGLKKRSPGRLRKPKPKTVAGVSGANGHKRRPGRPPKNSQAISVMVPYDTTGEAIPQESAPRPRGRPRKGMGSIAAGVGVVLG
LSDKLSGLTRNGSDGGGIEPRRFERPVGRPRKYADESGTESDTEEDFREKLQYLQQRVRAIVAVLKPELPNGAPETVVAAVGELEILADLDIDKPVPAST
LKAVTAPGS

DESeq2's median of ratios [FLAX]

Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G18035 HON4 winged-helix DNA-binding trans... Lus10004328
[exp]
0 1
AT1G48620 HON5 high mobility group A5 (.1) Lus10028911
[exp]
1.0 0.9516
AT1G48620 HON5 high mobility group A5 (.1) Lus10032231
[exp]
2.6 0.8865
AT5G02560 HTA12 histone H2A 12 (.1.2) Lus10023754
[exp]
3.5 0.9111
AT3G12210 DNA binding (.1.2) Lus10018653
[exp]
8.9 0.8840
AT5G02560 HTA12 histone H2A 12 (.1.2) Lus10005444
[exp]
9.5 0.9088
AT5G48820 ICK6, KRP3 KIP-RELATED PROTEIN 3, inhibit... Lus10011862
[exp]
12.4 0.8858
AT2G25970 KH domain-containing protein (... Lus10020998
[exp]
15.9 0.8626
AT1G70710 CEL1 ,AtGH9B1 CELLULASE 1, glycosyl hydrolas... Lus10029071
[exp]
19.5 0.8771
AT1G51060 HTA10 histone H2A 10 (.1) Lus10042960
[exp]
19.6 0.8836
AT4G01560 MEE49 maternal effect embryo arrest ... Lus10007860
[exp]
23.0 0.8567

Lus10004328 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.