Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G64950 238 / 3e-75 Mitochondrial transcription termination factor family protein (.1) AT5G07900 143 / 5e-39 Mitochondrial transcription termination factor family protein (.1) AT1G21150 141 / 4e-38 Mitochondrial transcription termination factor family protein (.1) AT1G62010 99 / 1e-22 Mitochondrial transcription termination factor family protein (.1) AT1G62120 98 / 3e-22 Mitochondrial transcription termination factor family protein (.1) AT1G62150 96 / 1e-21 Mitochondrial transcription termination factor family protein (.1) AT1G61970 92 / 3e-20 Mitochondrial transcription termination factor family protein (.1.2) AT1G61990 91 / 6e-20 Mitochondrial transcription termination factor family protein (.1) AT1G61980 89 / 3e-19 Mitochondrial transcription termination factor family protein (.1) AT3G46950 80 / 3e-16 Mitochondrial transcription termination factor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028912 [exp] 671 / 0 AT5G64950 249 / 1e-79 Mitochondrial transcription termination factor family protein (.1) Lus10029199 [exp] 483 / 3e-171 AT5G64950 226 / 1e-70 Mitochondrial transcription termination factor family protein (.1) Lus10010714 [exp] 179 / 1e-53 AT4G38840 117 / 3e-33 SAUR-like auxin-responsive protein family (.1) Lus10008688 [exp] 171 / 1e-49 AT5G07900 197 / 2e-59 Mitochondrial transcription termination factor family protein (.1) Lus10036450 [exp] 137 / 1e-36 AT5G07900 176 / 3e-51 Mitochondrial transcription termination factor family protein (.1) Lus10040817 [exp] 126 / 1e-32 AT5G07900 225 / 6e-70 Mitochondrial transcription termination factor family protein (.1) Lus10041122 [exp] 125 / 2e-32 AT5G07900 166 / 2e-47 Mitochondrial transcription termination factor family protein (.1) Lus10040820 [exp] 124 / 7e-32 AT5G07900 221 / 2e-68 Mitochondrial transcription termination factor family protein (.1) Lus10016550 [exp] 119 / 5e-30 AT5G07900 219 / 9e-68 Mitochondrial transcription termination factor family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G190300 [exp] 167 / 4e-48 AT5G07900 209 / 8e-64 Mitochondrial transcription termination factor family protein (.1) Potri.001G034700 [exp] 166 / 2e-47 AT5G07900 202 / 2e-61 Mitochondrial transcription termination factor family protein (.1) Potri.003G190400 [exp] 162 / 2e-46 AT5G07900 206 / 9e-63 Mitochondrial transcription termination factor family protein (.1) Potri.004G222000 [exp] 162 / 2e-46 AT5G07900 200 / 1e-60 Mitochondrial transcription termination factor family protein (.1) Potri.001G034933 [exp] 160 / 1e-45 AT5G07900 194 / 3e-58 Mitochondrial transcription termination factor family protein (.1) Potri.001G029400 [exp] 157 / 4e-44 AT5G07900 181 / 4e-53 Mitochondrial transcription termination factor family protein (.1) Potri.014G133200 [exp] 156 / 7e-44 AT5G07900 436 / 3e-152 Mitochondrial transcription termination factor family protein (.1) Potri.001G030300 [exp] 156 / 8e-44 AT5G07900 190 / 2e-56 Mitochondrial transcription termination factor family protein (.1) Potri.003G190700 [exp] 154 / 4e-43 AT5G07900 213 / 3e-65 Mitochondrial transcription termination factor family protein (.1) Potri.003G189300 [exp] 150 / 1e-41 AT5G07900 178 / 6e-52 Mitochondrial transcription termination factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02536 [flax] [poplar] mTERF mTERF
Representative CDS sequence Show only first row Show all	>Lus10004329 pacid=23161729 polypeptide=Lus10004329 locus=Lus10004329.g ID=Lus10004329.BGIv1.0 annot-version=v1.0 ATGGCGATGCTATCTCTCTCAACTTACCGTCTCAGCAATCTACGATTCGGGGCTTGCTTCTCTACACTCGCCGAGTCCTCCTCAGCTGCATCAACCTCCT CTTCCCTAGTGGATTGCTTGATTGCAACCTTCAAATTCACCGACACCCAAGCCAACTCCATCGCCGCTCGCTTCTCCGATTCCAAATCTCCTACAAAACC CCAAGCCTTATCCCAATTCCTTCGCGGCCAGGGTTTCACCGATGCCCACATACAAGCTACAGTTTCCGGAGCACCTCAGATTCTATTTGCCAACATTGAC ACGAATCTTAAACCCAAGATCCAGCATTTCCGAAAACTAGGCCTCGAGGGTTCTCGTCTTTGTAAGTTCCTCTCGAAAAATCCCACGATTTTGACTGCTA GTTTGAAGGAGAAGTTAGGCCCTCGACTTGAAATTTTGCAGAAATCCATCTCTCAGAAGGATTTAGCTAGGGGTGTAGAGAGGTGCAGTTGGGTTCTGTA TAAGTACTCTGAATCTAGACTGTTGTCGAACACTGCATTGCTCCAGAGCTGTGGCATTGTCGGCTCTCAGCTCTCGATGCTGTTCAGGATGCAGCCCAGG ATGTTCTTGAGGGAAGAATCTGAACTTAGAGGCATTGTTTCCAGGACTTTGGATTTCGGGTTCTCCACAAAATCTAAGATGTTTGTACACGGTTTGTACA CTGTCGGCGGATGGAGTGACGCTGCCCTCGAGAGAAAATTCGCCATCTTCGACGGGTTTGGATTCTCCAGGGAAGAATGTATCGGCATGTTCAGAAAGGC ACCAGTGTTGCTGAGATGCTCCGAGGAGAAGTTGAAGTTTGGGATTGGTTTCTATTTGAACACAATGAAGCTGAACAAAGAGATGATCTGCAGAAGGCCT TCGCTGTTGATGTATAGCATGGCGGAAAGAGTGATCCCTCGATACCGTGTTTTGGAGATTATGGAGTCGAAGGGGCTGTTTCAGAAGAGGCCGAACTTCA TCACTGTTGCGAGTCTGACGAATGAGAGGTTTGTCGAGAAGTTTGTGTTTTGGTCCGTGGATCATGCAGAGGAACTACTGATGGTTTACAATGGTCATGA TGTCAGTGCTGCTAGAGATGAAACAAGTTTATAG
AA sequence Show only first row Show all	>Lus10004329 pacid=23161729 polypeptide=Lus10004329 locus=Lus10004329.g ID=Lus10004329.BGIv1.0 annot-version=v1.0 MAMLSLSTYRLSNLRFGACFSTLAESSSAASTSSSLVDCLIATFKFTDTQANSIAARFSDSKSPTKPQALSQFLRGQGFTDAHIQATVSGAPQILFANID TNLKPKIQHFRKLGLEGSRLCKFLSKNPTILTASLKEKLGPRLEILQKSISQKDLARGVERCSWVLYKYSESRLLSNTALLQSCGIVGSQLSMLFRMQPR MFLREESELRGIVSRTLDFGFSTKSKMFVHGLYTVGGWSDAALERKFAIFDGFGFSREECIGMFRKAPVLLRCSEEKLKFGIGFYLNTMKLNKEMICRRP SLLMYSMAERVIPRYRVLEIMESKGLFQKRPNFITVASLTNERFVEKFVFWSVDHAEELLMVYNGHDVSAARDETSL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G64950			Mitochondrial transcription te...		Lus10004329 [exp]	0	1
AT3G57610		ADSS, ATPURA	adenylosuccinate synthase (.1)		Lus10040512 [exp]	1.7	0.9135
AT3G23940			dehydratase family (.1.2)		Lus10033370 [exp]	2.2	0.8911
AT3G62660		GATL7	galacturonosyltransferase-like...		Lus10001461 [exp]	3.7	0.8681
AT5G07900			Mitochondrial transcription te...		Lus10041122 [exp]	5.3	0.9038
AT5G06770	C3HZnF		KH domain-containing protein /...		Lus10021043 [exp]	7.1	0.8582
AT5G28740			Tetratricopeptide repeat (TPR)...		Lus10041573 [exp]	7.5	0.8941
AT5G64950			Mitochondrial transcription te...		Lus10028912 [exp]	9.1	0.8277
AT1G33140		PGY2	PIGGYBACK2, Ribosomal protein ...		Lus10032962 [exp]	10.7	0.8943
AT3G49080			Ribosomal protein S5 domain 2-...		Lus10014970 [exp]	11.8	0.8733
AT3G56550			Pentatricopeptide repeat (PPR)...		Lus10041326 [exp]	11.8	0.8792

Compare expression of checked genes

Lus10004329 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.