Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G24620 183 / 1e-59 EF hand calcium-binding protein family (.1) AT5G37770 108 / 1e-30 CML24, TCH2 TOUCH 2, CALMODULIN-LIKE 24, EF hand calcium-binding protein family (.1) AT1G66400 108 / 1e-30 CML23 calmodulin like 23 (.1) AT1G73630 102 / 4e-28 EF hand calcium-binding protein family (.1) AT1G18210 100 / 3e-27 Calcium-binding EF-hand family protein (.1.2) AT2G27030 88 / 1e-22 CAM5, CAM2, ACAM-2, ACAM-5 calmodulin 5 (.1.2.3) AT1G66410 88 / 1e-22 ACAM-4, CAM4 calmodulin 4 (.1.2) AT5G21274 88 / 1e-22 ACAM-6, CAM6 calmodulin 6 (.1) AT5G37780 88 / 1e-22 ACAM-1, TCH1, CAM1 TOUCH 1, calmodulin 1 (.1.2.3) AT3G43810 87 / 2e-22 CAM7 calmodulin 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028913 [exp] 267 / 3e-93 AT1G24620 204 / 5e-68 EF hand calcium-binding protein family (.1) Lus10029660 [exp] 150 / 2e-47 AT1G24620 102 / 3e-28 EF hand calcium-binding protein family (.1) Lus10024574 [exp] 144 / 9e-45 AT1G24620 143 / 4e-44 EF hand calcium-binding protein family (.1) Lus10019863 [exp] 100 / 3e-27 AT2G15680 233 / 9e-79 calmodulin-like 30, Calcium-binding EF-hand family protein (.1) Lus10009127 [exp] 100 / 2e-26 AT1G66400 147 / 2e-44 calmodulin like 23 (.1) Lus10018012 [exp] 98 / 2e-26 AT1G18210 195 / 2e-64 Calcium-binding EF-hand family protein (.1.2) Lus10014050 [exp] 97 / 1e-25 AT2G15680 239 / 4e-81 calmodulin-like 30, Calcium-binding EF-hand family protein (.1) Lus10009059 [exp] 94 / 1e-24 AT1G18210 197 / 3e-65 Calcium-binding EF-hand family protein (.1.2) Lus10031345 [exp] 92 / 4e-24 AT1G18210 196 / 1e-64 Calcium-binding EF-hand family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G107100 [exp] 197 / 4e-65 AT1G24620 220 / 2e-73 EF hand calcium-binding protein family (.1) Potri.008G134300 [exp] 194 / 6e-64 AT1G24620 219 / 2e-73 EF hand calcium-binding protein family (.1) Potri.015G039500 [exp] 103 / 2e-28 AT1G18210 189 / 6e-62 Calcium-binding EF-hand family protein (.1.2) Potri.012G048200 [exp] 102 / 2e-28 AT1G18210 188 / 8e-62 Calcium-binding EF-hand family protein (.1.2) Potri.004G089400 [exp] 98 / 1e-26 AT1G66400 157 / 7e-50 calmodulin like 23 (.1) Potri.017G126200 [exp] 96 / 9e-26 AT1G66400 155 / 5e-49 calmodulin like 23 (.1) Potri.014G070700 [exp] 97 / 1e-25 AT1G18210 94 / 2e-24 Calcium-binding EF-hand family protein (.1.2) Potri.012G041000 [exp] 89 / 6e-23 AT5G37780 283 / 9e-100 TOUCH 1, calmodulin 1 (.1.2.3) Potri.001G222200 [exp] 89 / 1e-22 AT2G27030 304 / 6e-107 calmodulin 5 (.1.2.3) Potri.015G032600 [exp] 88 / 1e-22 AT5G37780 284 / 3e-100 TOUCH 1, calmodulin 1 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0220 [flax] [poplar] EF_hand PF00036 [flax] [poplar] EF-hand_1 EF hand
Representative CDS sequence Show only first row Show all	>Lus10004330 pacid=23161730 polypeptide=Lus10004330 locus=Lus10004330.g ID=Lus10004330.BGIv1.0 annot-version=v1.0 ATGAACTGCCACGCCTCCGAGCTAGACCAGGTCTTCAAGAAGTTCGACGTCAATGGCGACGGCAAGATCTCCGCCTCCGAGCTGGGCATGATCATGTCCA GTCTCGGCCACAGGGCCAACGACGACGAGCTCCAGAAGATGATCACCGAGTTCGACGCCGACGGGGACGGGTTCATCGATTTCGACGAGTTCGTGGCCAT GAACACCCAGGGGGTCGGGTCCGAGGAGGCCATGGTGAATCTGAGGCACGCGTTTTCCGTGTACGACATCGACGGCAACGGGTCGATCACCGCCGAGGAG CTGCACAAGGTGATGATCAGCTTGGGGGAAGAGTGCTCGATTGCAGAGTGCAGGAAGATGATCAGCGGCGTGGATCGGGACGGCAACGGGACGATCGATT TCGAGGAGTTTAAGATGATGATGACTATGGGTTCCAGGTGGGGTTCTTCCGAGCAGTGA
AA sequence Show only first row Show all	>Lus10004330 pacid=23161730 polypeptide=Lus10004330 locus=Lus10004330.g ID=Lus10004330.BGIv1.0 annot-version=v1.0 MNCHASELDQVFKKFDVNGDGKISASELGMIMSSLGHRANDDELQKMITEFDADGDGFIDFDEFVAMNTQGVGSEEAMVNLRHAFSVYDIDGNGSITAEE LHKVMISLGEECSIAECRKMISGVDRDGNGTIDFEEFKMMMTMGSRWGSSEQ

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G24620			EF hand calcium-binding protei...		Lus10004330 [exp]	0	1
AT3G62580			Late embryogenesis abundant pr...		Lus10025037 [exp]	7.9	0.8035
AT5G58375			Methyltransferase-related prot...		Lus10008585 [exp]	14.4	0.8345
AT5G13810			Glutaredoxin family protein (....		Lus10039537 [exp]	15.4	0.8175
AT4G13010			Oxidoreductase, zinc-binding d...		Lus10003159 [exp]	17.6	0.8131
AT2G31305		INH3	inhibitor-3 (.1)		Lus10018105 [exp]	24.2	0.7056
AT1G55910		ZIP11	zinc transporter 11 precursor ...		Lus10004413 [exp]	25.1	0.7925
AT5G47120		ATBI-1, ATBI1	ARABIDOPSIS BAX INHIBITOR 1, B...		Lus10000097 [exp]	28.3	0.7817
AT4G32020			unknown protein		Lus10005344 [exp]	32.5	0.8144
AT5G60570			Galactose oxidase/kelch repeat...		Lus10037413 [exp]	37.0	0.8103
AT5G13860		ELC-LIKE, ATELC...	ELCH-like (.1)		Lus10041612 [exp]	37.8	0.8030

Compare expression of checked genes

Lus10004330 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.