Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G12300 427 / 4e-145 CYP706A4 "cytochrome P450, family 706, subfamily A, polypeptide 4", cytochrome P450, family 706, subfamily A, polypeptide 4 (.1) AT4G12320 427 / 6e-145 CYP706A6 "cytochrome P450, family 706, subfamily A, polypeptide 6", cytochrome P450, family 706, subfamily A, polypeptide 6 (.1) AT4G12330 424 / 7e-144 CYP706A7 "cytochrome P450, family 706, subfamily A, polypeptide 7", cytochrome P450, family 706, subfamily A, polypeptide 7 (.1) AT4G12310 411 / 8e-139 CYP706A5 "cytochrome P450, family 706, subfamily A, polypeptide 5", cytochrome P450, family 706, subfamily A, polypeptide 5 (.1) AT5G44620 407 / 4e-137 CYP706A3 "cytochrome P450, family 706, subfamily A, polypeptide 3", cytochrome P450, family 706, subfamily A, polypeptide 3 (.1) AT4G22710 394 / 9e-132 CYP706A2 "cytochrome P450, family 706, subfamily A, polypeptide 2", cytochrome P450, family 706, subfamily A, polypeptide 2 (.1) AT4G22690 392 / 6e-131 CYP706A1 "cytochrome P450, family 706, subfamily A, polypeptide 1", cytochrome P450, family 706, subfamily A, polypeptide 1 (.1) AT5G07990 325 / 2e-105 CYP75B1, D501, TT7 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) AT2G45570 312 / 2e-100 CYP76C2 "cytochrome P450, family 76, subfamily C, polypeptide 2", cytochrome P450, family 76, subfamily C, polypeptide 2 (.1) AT2G45560 310 / 2e-99 CYP76C1 "cytochrome P450, family 76, subfamily C, polypeptide 1", cytochrome P450, family 76, subfamily C, polypeptide 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028914 [exp] 1002 / 0 AT4G12320 461 / 3e-158 "cytochrome P450, family 706, subfamily A, polypeptide 6", cytochrome P450, family 706, subfamily A, polypeptide 6 (.1) Lus10032026 [exp] 550 / 0 AT4G12300 464 / 1e-159 "cytochrome P450, family 706, subfamily A, polypeptide 4", cytochrome P450, family 706, subfamily A, polypeptide 4 (.1) Lus10032215 [exp] 538 / 0 AT4G12300 462 / 1e-158 "cytochrome P450, family 706, subfamily A, polypeptide 4", cytochrome P450, family 706, subfamily A, polypeptide 4 (.1) Lus10024578 [exp] 513 / 3e-178 AT4G12320 437 / 7e-149 "cytochrome P450, family 706, subfamily A, polypeptide 6", cytochrome P450, family 706, subfamily A, polypeptide 6 (.1) Lus10032214 [exp] 508 / 2e-176 AT4G12320 433 / 2e-147 "cytochrome P450, family 706, subfamily A, polypeptide 6", cytochrome P450, family 706, subfamily A, polypeptide 6 (.1) Lus10032211 [exp] 501 / 3e-174 AT4G12320 432 / 2e-147 "cytochrome P450, family 706, subfamily A, polypeptide 6", cytochrome P450, family 706, subfamily A, polypeptide 6 (.1) Lus10024577 [exp] 494 / 2e-171 AT4G12300 444 / 3e-152 "cytochrome P450, family 706, subfamily A, polypeptide 4", cytochrome P450, family 706, subfamily A, polypeptide 4 (.1) Lus10032213 [exp] 489 / 2e-169 AT4G12300 453 / 1e-155 "cytochrome P450, family 706, subfamily A, polypeptide 4", cytochrome P450, family 706, subfamily A, polypeptide 4 (.1) Lus10024581 [exp] 454 / 1e-156 AT4G12300 395 / 5e-134 "cytochrome P450, family 706, subfamily A, polypeptide 4", cytochrome P450, family 706, subfamily A, polypeptide 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G118400 [exp] 563 / 0 AT4G12300 429 / 9e-146 "cytochrome P450, family 706, subfamily A, polypeptide 4", cytochrome P450, family 706, subfamily A, polypeptide 4 (.1) Potri.003G114400 [exp] 500 / 2e-173 AT4G12320 495 / 1e-171 "cytochrome P450, family 706, subfamily A, polypeptide 6", cytochrome P450, family 706, subfamily A, polypeptide 6 (.1) Potri.001G118500 [exp] 480 / 1e-165 AT4G12320 627 / 0.0 "cytochrome P450, family 706, subfamily A, polypeptide 6", cytochrome P450, family 706, subfamily A, polypeptide 6 (.1) Potri.005G045800 [exp] 454 / 5e-155 AT4G12300 577 / 0.0 "cytochrome P450, family 706, subfamily A, polypeptide 4", cytochrome P450, family 706, subfamily A, polypeptide 4 (.1) Potri.009G069100 [exp] 338 / 2e-110 AT5G07990 512 / 1e-178 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.013G073300 [exp] 338 / 4e-110 AT5G07990 711 / 0.0 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.001G113900 [exp] 320 / 2e-103 AT2G45550 496 / 1e-172 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Potri.001G274600 [exp] 314 / 4e-101 AT5G07990 488 / 2e-169 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.016G049800 [exp] 313 / 1e-100 AT5G06900 536 / 0.0 "cytochrome P450, family 93, subfamily D, polypeptide 1", cytochrome P450, family 93, subfamily D, polypeptide 1 (.1) Potri.016G137600 [exp] 311 / 4e-100 AT3G48270 401 / 2e-135 "cytochrome P450, family 71, subfamily A, polypeptide 26", cytochrome P450, family 71, subfamily A, polypeptide 26 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10004331 pacid=23161746 polypeptide=Lus10004331 locus=Lus10004331.g ID=Lus10004331.BGIv1.0 annot-version=v1.0 ATGAATATGGCTCTCAATATCCTCCATGACTTGCAGGCATGGTACACATCACCCGCCATGTCATCGTCCCACATGGACACCGCCAAGTTCCTTGTCGCAA TGGTCCTTCTAACAATCGTAACATCATTTCTCGTGACGAAAAAGTGGACCTCGAAAGGGGCCCCACTCCCTCCGGGTCCAACGGGGCTGCCTATTGTCGG GTACCTCCCTTTCCTAGGTGTCCACCTCCACCACGAGTTTGCCAAGCTGGCTGCCACTTACGGTCCGGTCTACAAGATCTGGCTCGGGACCAAGCTCTGC GTGGTGGTCAGCTCACCTTCCTTGGTCAAGGAAGTGGTGAGAGATCAGGACAGCGTGTTTGCCAACCGGGCCCCGCCCATTGCATCCGTGGTGCTGACCT ACGGATGCGATGACGTGGCGTTCTCGAACTACGGCCCCTTGTGGAAGAAGCTGAGGAAGGTGTTCGTGAGGGAGATGCTGAGCAGCGCCAGCCTGGAGGC GTGTTACGTGCTGAGGAAGGAACAGGTACGGAACTCTGTTAAGGAAGTGTACTCGAGGTGTGTCGATGGGGCGATGGACGTGGGCGAAATAGCGTTCAAA ACCACGACAAATGCTATGATGAGCATGCTCTGGGGAGGCGTGGAGGAAGCCCTAGGGAAGACTAGCAGTAGCTTTTACGGCGAGTTTAGGGACTTGGAGA CGGAGATGTTGGTTCTGATGGGAACCCCTAATGTGTCGGATTTCATACCTGCTTTAGCCAGGTTCGACTTGCAAGGGATCCGAAAGAAGTCCAAGGTGTT GCTCGACAAGTTTGATGTGATTTTGAGCTCGGCGATCGAGGAACGACTTAGGTTAGTCGAGAAAAGGGAAGATACAAGGAAGGATTTTTTGCAAGTGTTG CTGGATTTGAACCGTGCTGGCCATGTTGATACATGTATTACCACCAATCAAGTCAAAGCTTTGCTTATGGACATATTAGTTGGTGGAACAGACACAACAG CAACCATGATAGAGTGGACAATGGCAGAGCTAGTCAAGCATCCAGCGGCAATGGCGAAAGTCTACGAAGAGCTTGACCGAGTCGTGGGACAAAACGGCAT CGTAGAAGAATCCCACCTCCACAAGCTAAGCTACCTAGAAGCTGTAATCAAAGAAACATTCAGGCTACATCCAGCGTTGCCACTGCTAGTGCCACGGTGT CCTAGTCAGACTTGCGAGCTAGGCGGATACACCATACCAAAGGGGACGATAGTCTATTTGAACGCGTACGCGCTCCACACGGACCCGGAGCTGTGGGACC AACCGCTGGAGTTCGAACCGGGGAGGTTTCTCGACGCGGGGGACGAGGAAAACGTGAAGTTTGACTTTCAGGGGAACAATTTCCAGTTCCTCCCGTTCGG ATCGGGGAGGAGGGTGTGTCCTGGACAGCCGTTGGGGGTGAATACGCAGAAGTATGTGTTGGCTACGTTTTTGCACTCTTTTGAGTGGAAGCTGCCGATG GGGAGTGAGCTGGAGTTGTCGGATAAGTTTGGGATCGTTATTAAGAAGATGAATCCTCTGATCCTCGTTCCGACTCCCAGGCTGTCGAATTTGGAACTCT TCTAG
AA sequence Show only first row Show all	>Lus10004331 pacid=23161746 polypeptide=Lus10004331 locus=Lus10004331.g ID=Lus10004331.BGIv1.0 annot-version=v1.0 MNMALNILHDLQAWYTSPAMSSSHMDTAKFLVAMVLLTIVTSFLVTKKWTSKGAPLPPGPTGLPIVGYLPFLGVHLHHEFAKLAATYGPVYKIWLGTKLC VVVSSPSLVKEVVRDQDSVFANRAPPIASVVLTYGCDDVAFSNYGPLWKKLRKVFVREMLSSASLEACYVLRKEQVRNSVKEVYSRCVDGAMDVGEIAFK TTTNAMMSMLWGGVEEALGKTSSSFYGEFRDLETEMLVLMGTPNVSDFIPALARFDLQGIRKKSKVLLDKFDVILSSAIEERLRLVEKREDTRKDFLQVL LDLNRAGHVDTCITTNQVKALLMDILVGGTDTTATMIEWTMAELVKHPAAMAKVYEELDRVVGQNGIVEESHLHKLSYLEAVIKETFRLHPALPLLVPRC PSQTCELGGYTIPKGTIVYLNAYALHTDPELWDQPLEFEPGRFLDAGDEENVKFDFQGNNFQFLPFGSGRRVCPGQPLGVNTQKYVLATFLHSFEWKLPM GSELELSDKFGIVIKKMNPLILVPTPRLSNLELF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G12300		CYP706A4	"cytochrome P450, family 706, ...		Lus10004331 [exp]	0	1
AT5G20110			Dynein light chain type 1 fami...		Lus10014484 [exp]	1.4	0.9772
AT4G34770			SAUR-like auxin-responsive pro...		Lus10007562 [exp]	2.4	0.9520
AT5G10720		CKI2, AHK5	CYTOKININ INDEPENDENT 2, histi...		Lus10020115 [exp]	2.4	0.9685
AT3G26270		CYP71B25	"cytochrome P450, family 71, s...		Lus10027427 [exp]	2.8	0.9393
					Lus10024121 [exp]	3.2	0.9557
AT2G47270	bHLH	bHLH151, UPB1	UPBEAT1, sequence-specific DNA...		Lus10002419 [exp]	4.0	0.9562
AT1G20190		ATHEXPALPHA1.14...	EXPANSIN 11, expansin 11 (.1)		Lus10034548 [exp]	4.9	0.9584
AT5G45580	GARP		Homeodomain-like superfamily p...		Lus10012142 [exp]	5.5	0.9308
AT3G18200			nodulin MtN21 /EamA-like trans...		Lus10027251 [exp]	7.1	0.9366
AT3G50280			HXXXD-type acyl-transferase fa...		Lus10031149 [exp]	7.9	0.9510

Compare expression of checked genes

Lus10004331 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.