Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G12310 258 / 3e-90 Calcium-binding EF-hand family protein (.1) AT1G62820 255 / 5e-89 Calcium-binding EF-hand family protein (.1) AT5G21274 148 / 1e-46 ACAM-6, CAM6 calmodulin 6 (.1) AT3G43810 148 / 1e-46 CAM7 calmodulin 7 (.1) AT3G56800 147 / 5e-46 ACAM-3, CAM3 calmodulin 3 (.1) AT2G27030 147 / 5e-46 CAM5, CAM2, ACAM-2, ACAM-5 calmodulin 5 (.1.2.3) AT2G41110 147 / 5e-46 ACAM-2, ATCAL5, CAM2 calmodulin 2 (.1.2) AT5G37780 146 / 1e-45 ACAM-1, TCH1, CAM1 TOUCH 1, calmodulin 1 (.1.2.3) AT1G66410 146 / 1e-45 ACAM-4, CAM4 calmodulin 4 (.1.2) AT3G22930 124 / 5e-37 CML11 calmodulin-like 11 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028915 [exp] 289 / 3e-102 AT1G12310 258 / 7e-90 Calcium-binding EF-hand family protein (.1) Lus10032205 [exp] 280 / 8e-99 AT1G12310 263 / 7e-92 Calcium-binding EF-hand family protein (.1) Lus10024567 [exp] 279 / 2e-98 AT1G12310 261 / 2e-91 Calcium-binding EF-hand family protein (.1) Lus10027283 [exp] 148 / 2e-46 AT2G27030 300 / 2e-106 calmodulin 5 (.1.2.3) Lus10038981 [exp] 148 / 2e-46 AT2G27030 300 / 2e-106 calmodulin 5 (.1.2.3) Lus10037423 [exp] 148 / 2e-46 AT2G27030 300 / 2e-106 calmodulin 5 (.1.2.3) Lus10041288 [exp] 148 / 2e-46 AT2G27030 300 / 2e-106 calmodulin 5 (.1.2.3) Lus10039391 [exp] 120 / 3e-35 AT4G14640 268 / 1e-93 calmodulin-like 8, calmodulin 8 (.1) Lus10022589 [exp] 120 / 4e-35 AT3G43810 255 / 2e-88 calmodulin 7 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G115000 [exp] 262 / 2e-91 AT1G12310 266 / 4e-93 Calcium-binding EF-hand family protein (.1) Potri.001G117900 [exp] 260 / 8e-91 AT1G12310 266 / 5e-93 Calcium-binding EF-hand family protein (.1) Potri.016G024700 [exp] 148 / 1e-46 AT3G43810 300 / 2e-106 calmodulin 7 (.1) Potri.009G021500 [exp] 148 / 1e-46 AT3G43810 300 / 2e-106 calmodulin 7 (.1) Potri.006G026700 [exp] 148 / 1e-46 AT3G43810 300 / 2e-106 calmodulin 7 (.1) Potri.001G222200 [exp] 146 / 3e-45 AT2G27030 304 / 6e-107 calmodulin 5 (.1.2.3) Potri.012G041000 [exp] 145 / 3e-45 AT5G37780 283 / 9e-100 TOUCH 1, calmodulin 1 (.1.2.3) Potri.015G032600 [exp] 144 / 4e-45 AT5G37780 284 / 3e-100 TOUCH 1, calmodulin 1 (.1.2.3) Potri.010G080900 [exp] 121 / 6e-36 AT4G14640 270 / 2e-94 calmodulin-like 8, calmodulin 8 (.1) Potri.008G159300 [exp] 120 / 2e-35 AT3G22930 235 / 1e-80 calmodulin-like 11 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0220 [flax] [poplar] EF_hand PF00036 [flax] [poplar] EF-hand_1 EF hand
Representative CDS sequence Show only first row Show all	>Lus10004332 pacid=23161736 polypeptide=Lus10004332 locus=Lus10004332.g ID=Lus10004332.BGIv1.0 annot-version=v1.0 ATGGGAAAGGTTAGCGACGACCAGGTTCACTCGATGAAAGAGGCCTTCGTCCTCTTCGACACCGACGGCGACGGCAAAATCGCGCCCTCCGAGCTCGGGA TCCTCATGCGATCCCTCGGCGGCAACCCTACCCAGGCCCAGCTCAAAGCCATCGTCACCGAGGAGAAGCTAACCGCTCCGTTCGATTTCCAGAGGTTCCT CGATATCATGGGGAAGCACATGAAAACCGAGCCCTTCGATCGCCAGCTCCGCGACGCTTTCAAGGTCCTCGATAAGGACTCCGCCGGGTTCGTCTCAGTA CAGGATCTGCGCCACATCTTGACGAGTATCGGGGAGAAGCTGGAGCCTGCAGAGTTCGACGAGTGGATCCGGGAGGTGGATGTCGGATCGGATGGGAAGA TCCGGTACGAGGATTTCATTGCTAGGATGGTTGCCAAGTGA
AA sequence Show only first row Show all	>Lus10004332 pacid=23161736 polypeptide=Lus10004332 locus=Lus10004332.g ID=Lus10004332.BGIv1.0 annot-version=v1.0 MGKVSDDQVHSMKEAFVLFDTDGDGKIAPSELGILMRSLGGNPTQAQLKAIVTEEKLTAPFDFQRFLDIMGKHMKTEPFDRQLRDAFKVLDKDSAGFVSV QDLRHILTSIGEKLEPAEFDEWIREVDVGSDGKIRYEDFIARMVAK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G12310			Calcium-binding EF-hand family...		Lus10004332 [exp]	0	1
					Lus10026314 [exp]	1.4	0.9182
AT1G67570			Protein of unknown function (D...		Lus10043011 [exp]	1.7	0.8948
					Lus10042355 [exp]	2.0	0.9155
AT4G18760		AtRLP51	receptor like protein 51 (.1)		Lus10015226 [exp]	2.8	0.8930
AT5G64080		AtXYP1	xylogen protein 1, Bifunctiona...		Lus10021604 [exp]	3.2	0.8863
AT4G02580			NADH-ubiquinone oxidoreductase...		Lus10024851 [exp]	4.0	0.8754
AT5G17490	GRAS	AtRGL3, RGL3	RGA-like protein 3 (.1)		Lus10028511 [exp]	4.2	0.8746
AT1G04560			AWPM-19-like family protein (....		Lus10014456 [exp]	5.3	0.8502
AT3G52300		ATPQ	"ATP synthase D chain, mitocho...		Lus10023337 [exp]	5.5	0.8499
AT1G07400			HSP20-like chaperones superfam...		Lus10016457 [exp]	6.0	0.8842

Compare expression of checked genes

Lus10004332 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.