Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G22730 737 / 0 Leucine-rich repeat protein kinase family protein (.1) AT2G45340 638 / 0 Leucine-rich repeat protein kinase family protein (.1) AT5G51560 625 / 0 Leucine-rich repeat protein kinase family protein (.1) AT4G22130 222 / 1e-62 SRF8 STRUBBELIG-receptor family 8 (.1.2) AT1G17230 216 / 3e-59 Leucine-rich receptor-like protein kinase family protein (.1) AT1G31420 207 / 3e-58 FEI1 FEI 1, Leucine-rich repeat protein kinase family protein (.1.2) AT1G60800 206 / 2e-57 NIK3 NSP-interacting kinase 3 (.1) AT2G33170 210 / 3e-57 Leucine-rich repeat receptor-like protein kinase family protein (.1) AT5G07280 209 / 1e-56 EXS, EMS1 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) AT4G08850 208 / 1e-56 Leucine-rich repeat receptor-like protein kinase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028916 [exp] 1263 / 0 AT4G22730 749 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10031123 [exp] 665 / 0 AT5G51560 855 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10031703 [exp] 660 / 0 AT5G51560 851 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10004032 [exp] 592 / 0 AT2G45340 747 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030279 [exp] 514 / 2e-174 AT2G45340 648 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10003612 [exp] 228 / 4e-63 AT1G35710 751 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Lus10030591 [exp] 206 / 1e-57 AT1G60800 929 / 0.0 NSP-interacting kinase 3 (.1) Lus10030898 [exp] 204 / 7e-57 AT1G60800 931 / 0.0 NSP-interacting kinase 3 (.1) Lus10022679 [exp] 201 / 5e-55 AT3G51740 926 / 0.0 inflorescence meristem receptor-like kinase 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G117800 [exp] 830 / 0 AT4G22730 847 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.003G115100 [exp] 798 / 0 AT4G22730 788 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.015G130100 [exp] 699 / 0 AT5G51560 940 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.014G068700 [exp] 674 / 0 AT2G45340 831 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.012G128700 [exp] 669 / 0 AT5G51560 906 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.002G147000 [exp] 667 / 0 AT2G45340 808 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.003G105000 [exp] 222 / 1e-63 AT1G31420 893 / 0.0 FEI 1, Leucine-rich repeat protein kinase family protein (.1.2) Potri.013G091000 [exp] 220 / 6e-61 AT3G56370 1227 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.001G129000 [exp] 211 / 1e-59 AT1G31420 928 / 0.0 FEI 1, Leucine-rich repeat protein kinase family protein (.1.2) Potri.019G058600 [exp] 216 / 2e-59 AT3G56370 1174 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0016 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10004333 pacid=23161743 polypeptide=Lus10004333 locus=Lus10004333.g ID=Lus10004333.BGIv1.0 annot-version=v1.0 ATGGGTCTTCTTCTCTTTCCATCCTTGTACATGGGTCTGCTCTTGATTTCACTGTCATCAATTGTTGTTTCTGGCAACACCGAGCTCAGAGCACTAATGG AGCTGAAATCTGCTCTTGACCCTACCAACAAGCTGTTGAGGTCGTGGAGCAGCGACGGCGAGCCTTGCAGCGGCTCTTTCGAAGGGGTCGCCTGCAACGA GCATCGTAAAGTGGCTAACATTTCTCTCCAGGGGAAAGGTCTCTCCGGAACTCTTTCCCCTGCAATTTCAGAGCTCAAATGCTTGTCTGGTCTCTACTTG CATTACAACTCCCTTTCTGGAGATATACCCAAAGAGCTTGCCAATCTTACAGAATTGTCTGATCTTTACCTCAATGTCAATAACCTCTCTGGCATCATTC CTCCTCGGATCGGTAACATGGCAGCTTTGCAAGTTGTGGAGCTATGCTGCAATCAGCTAACAGGGGAAATACCAGCAGAGATGGGTTCCTTGAAGAAGCT AAGTGTTATAGCATTGCAGTACAACAAGCTGAGTGGCCAAATACCTCAAAGTTTAGAGAGCTTACAGACTTTGACAAGGATTGATTTAGGGTTCAACAGT CTCTCCGGTGGAATTCCTCTAGGAATAGCTCAACTCCCACGTCTGCAACTCCTCGACGTCAGAAACAATTCCCTCTCAGGAATTGTCCCTTCTGCTTTAC AGAGACTAAACGAAGGGTTCGATTTCGAGAACAATCGAGGTCTATGCGGAGATGGGATTCCAGCGTTACGAGCTTGCTCGATCTTTGACAATGTGAACGT TAATGATATCGGAGGAGGGAAAAATCATGATCGACCGCTGATTAACGACACATTAACGAAAGAAACTCCAGAAAAGCCATCTGTATTCAGTGTACAGCCT GAATTGTGTAGTGATAACGAAACCGGTTGCTCGAAGTCCACCCCCAAGCTGCCACAGATTGCTATTGTGGCAGGAGTCATAACCGTTACGATTGCATTAA TGAGTGTATGCTTTCTAGTCATTTTCAGATACAGGAGGAGGAAACAGAAGATCGGGAATGCATCATCCGAGTCTCCGGTTAGTCCTTTGAGCGGAAGTCA TGACCAGCATCAGTTAAAGGAACTGAAGAGAGGAAGAAGTCTTGTGTCACCACTTGTGAGCTTGGAGTATCCCAATGGGTTTCATTTACCTGAGGAGAAC GATGATTACCTGAACAGCTACAGATTCAACCTGGAAGAGATCGAGTCAGCGACTCTGTGCTTCTCCGAAGCAAATTTGTTAGGGAAAGGGAGCTTCTCGT CTGTTTATAGAGGGGTGTTGATGAGAGATGGTACGGATGTTGCCATCACTAGCATCAACATGACTAGCTGCAAATCGGAAGATTCCGAGTTTGCTAAAGG GCTGAGCCTGTTGACTTCGTTGCGACATGATAATCTCGTTAGGCTCCGGGGATTCTGTTGCTCCAAAGGAAGAGGTGAATGTTACCTGGTTTATGATTTT GCTCCTAAAGGGAAGTTGTCCAAGTTCCTTGAAGCAGATGAAGGGAGTAGTAGCCCGGTGCTTGACTGGTCCTCCAGGGTATCCATCATCAATGGCATTG CGAAAGGTCTTGGATATCTGCACAGAGCAGAAGCAAGCAAACCAACAATCATTCACCGGAATATATCGGTGGACAAGATTCTGCTCGACCGGCAGCTAAA CCCACTGATCGCGGAGTCGGGACTTCCTAAGCTTTTAGCAGATGATATCATCTTCTTGACACTGAAAACAAGTGCTGCAATGGGATACCTGGCTCCAGAA TACATAACCACAGGGAGTTTCACTGAGAAAAGCGATGTCTATGCATTTGGGGCCATCATCCTTCAAGTACTGTGTGGAAGAAACATGCTCCCTAGCTCGA TGAGGGCGGCGGCTGCTTCGTGTAGATACCAAGATTTTATTGACAGAAGCCTGAAAGGGAACTTCTCTGAGCATGAGGCTGGGGTACTTGCAGACATTGC TCTTCGATGCACTCACGAATTGCCCGAGGAGCGGCCAGACATGGATGCTGTGATTGAAGAGTTGAACAGAAGCCAAACTTTTACTTCTTGA
AA sequence Show only first row Show all	>Lus10004333 pacid=23161743 polypeptide=Lus10004333 locus=Lus10004333.g ID=Lus10004333.BGIv1.0 annot-version=v1.0 MGLLLFPSLYMGLLLISLSSIVVSGNTELRALMELKSALDPTNKLLRSWSSDGEPCSGSFEGVACNEHRKVANISLQGKGLSGTLSPAISELKCLSGLYL HYNSLSGDIPKELANLTELSDLYLNVNNLSGIIPPRIGNMAALQVVELCCNQLTGEIPAEMGSLKKLSVIALQYNKLSGQIPQSLESLQTLTRIDLGFNS LSGGIPLGIAQLPRLQLLDVRNNSLSGIVPSALQRLNEGFDFENNRGLCGDGIPALRACSIFDNVNVNDIGGGKNHDRPLINDTLTKETPEKPSVFSVQP ELCSDNETGCSKSTPKLPQIAIVAGVITVTIALMSVCFLVIFRYRRRKQKIGNASSESPVSPLSGSHDQHQLKELKRGRSLVSPLVSLEYPNGFHLPEEN DDYLNSYRFNLEEIESATLCFSEANLLGKGSFSSVYRGVLMRDGTDVAITSINMTSCKSEDSEFAKGLSLLTSLRHDNLVRLRGFCCSKGRGECYLVYDF APKGKLSKFLEADEGSSSPVLDWSSRVSIINGIAKGLGYLHRAEASKPTIIHRNISVDKILLDRQLNPLIAESGLPKLLADDIIFLTLKTSAAMGYLAPE YITTGSFTEKSDVYAFGAIILQVLCGRNMLPSSMRAAAASCRYQDFIDRSLKGNFSEHEAGVLADIALRCTHELPEERPDMDAVIEELNRSQTFTS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G22730			Leucine-rich repeat protein ki...		Lus10004333 [exp]	0	1
AT4G22730			Leucine-rich repeat protein ki...		Lus10028916 [exp]	1.0	0.9313
AT2G36910		ATMDR1, ATPGP1,...	P-GLYCOPROTEIN 1, ARABIDOPSIS ...		Lus10023929 [exp]	3.7	0.9000
AT4G25230		RIN2	RPM1 interacting protein 2 (.1...		Lus10031728 [exp]	4.6	0.8991
AT1G61820		BGLU46	beta glucosidase 46 (.1.3)		Lus10007655 [exp]	4.9	0.8937
AT5G20480		EFR	EF-TU receptor (.1)		Lus10022864 [exp]	5.2	0.8642
AT1G68560		AXY3, TRG1, XYL...	thermoinhibition resistant ger...		Lus10035020 [exp]	5.9	0.8401
AT3G10150		ATPAP16, PAP16	purple acid phosphatase 16 (.1...		Lus10031039 [exp]	7.3	0.8437
AT2G36330			Uncharacterised protein family...		Lus10032148 [exp]	8.4	0.8835
AT1G61667			Protein of unknown function, D...		Lus10018396 [exp]	8.5	0.8693
AT4G25230		RIN2	RPM1 interacting protein 2 (.1...		Lus10031152 [exp]	9.5	0.8503

Compare expression of checked genes

Lus10004333 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.