Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G02570 1242 / 0 AXR6, ATCUL1 AUXIN RESISTANT 6, cullin 1 (.1.2.3.4) AT1G02980 979 / 0 ATCUL2, CUL2 cullin 2 (.1) AT1G43140 938 / 0 Cullin family protein (.1) AT1G59790 403 / 5e-135 Cullin family protein (.1) AT1G26830 390 / 4e-125 CUL3A, ATCUL3A, ATCUL3 cullin 3A, cullin 3 (.1) AT1G69670 381 / 1e-121 CUL3B, ATCUL3B ARABIDOPSIS THALIANA CULLIN 3B, cullin 3B (.1) AT5G46210 333 / 8e-103 CUL4, ATCUL4 cullin4 (.1) AT1G59800 258 / 1e-80 Cullin family protein (.1) AT2G04660 57 / 6e-08 APC2 anaphase-promoting complex/cyclosome 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028917 [exp] 1463 / 0 AT4G02570 1290 / 0.0 AUXIN RESISTANT 6, cullin 1 (.1.2.3.4) Lus10024562 [exp] 1404 / 0 AT4G02570 1271 / 0.0 AUXIN RESISTANT 6, cullin 1 (.1.2.3.4) Lus10032200 [exp] 1400 / 0 AT4G02570 1269 / 0.0 AUXIN RESISTANT 6, cullin 1 (.1.2.3.4) Lus10036739 [exp] 396 / 1e-127 AT1G26830 1335 / 0.0 cullin 3A, cullin 3 (.1) Lus10037188 [exp] 390 / 5e-125 AT1G26830 1328 / 0.0 cullin 3A, cullin 3 (.1) Lus10012835 [exp] 387 / 4e-124 AT1G26830 1320 / 0.0 cullin 3A, cullin 3 (.1) Lus10030485 [exp] 379 / 5e-121 AT1G26830 1317 / 0.0 cullin 3A, cullin 3 (.1) Lus10023306 [exp] 300 / 8e-92 AT5G46210 1077 / 0.0 cullin4 (.1) Lus10038504 [exp] 206 / 6e-58 AT5G46210 913 / 0.0 cullin4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G217300 [exp] 1217 / 0 AT4G02570 1272 / 0.0 AUXIN RESISTANT 6, cullin 1 (.1.2.3.4) Potri.003G115500 [exp] 1214 / 0 AT4G02570 1209 / 0.0 AUXIN RESISTANT 6, cullin 1 (.1.2.3.4) Potri.010G023800 [exp] 1202 / 0 AT4G02570 1265 / 0.0 AUXIN RESISTANT 6, cullin 1 (.1.2.3.4) Potri.001G117200 [exp] 1194 / 0 AT4G02570 1226 / 0.0 AUXIN RESISTANT 6, cullin 1 (.1.2.3.4) Potri.008G148300 [exp] 386 / 2e-123 AT1G26830 1342 / 0.0 cullin 3A, cullin 3 (.1) Potri.010G093200 [exp] 385 / 2e-123 AT1G26830 1345 / 0.0 cullin 3A, cullin 3 (.1) Potri.011G084400 [exp] 347 / 8e-108 AT5G46210 1250 / 0.0 cullin4 (.1) Potri.004G132900 [exp] 335 / 4e-103 AT5G46210 1211 / 0.0 cullin4 (.1) Potri.008G217700 [exp] 223 / 5e-67 AT4G02570 225 / 3e-68 AUXIN RESISTANT 6, cullin 1 (.1.2.3.4) Potri.008G224075 [exp] 209 / 4e-64 AT4G02570 218 / 4e-68 AUXIN RESISTANT 6, cullin 1 (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00888 [flax] [poplar] Cullin Cullin family CL0123 [flax] [poplar] HTH PF10557 [flax] [poplar] Cullin_Nedd8 Cullin protein neddylation domain
Representative CDS sequence Show only first row Show all	>Lus10004334 pacid=23161742 polypeptide=Lus10004334 locus=Lus10004334.g ID=Lus10004334.BGIv1.0 annot-version=v1.0 ATGGAGCGAAAAGTTATTGAATTGGACCAAGGATGGGACTATATGCAAAACGGGATCACTAAGCTGAAGAGAATTCTGGAGGGGGGTGTTGAGCAATTCA ACTCCGAAGAGTATATGATGCTTTACACAACTATCTACAACATGTGTACACAGAAGCCTCCTCATGATTACTCCCAACAGCTTTACGACAAGTACAGGGA GGCATTCGAAGAGTACATCAGCTCCACTGTACTCCCGGCAATCAGAGAGAAGCACGATGAGTTTATGTTGAGGGAGCTTGTCAAAAGATGGGCTAATCAC AAGCTTATGGTTCGATGGCTTTCACGTTTCTTTCATTATCTTGATCGTTACTTTATTGCTCGAAGGTCACTTCCTGCGTTGAATGTGGTTGGGCTTACCT GCTTCCGCACCCTGGTATATGAGGAGATAAATGTCAAAGCCAGGAATGCTGTGATTGCTCTTATTGATAAAGAACGTGAGAGTGAGCAGATTGATAGAGC CTTGTTAAAGAACGTGTTAGATATATTTGTGGAAATTGGAATGGGGCAAATGGATTGCTATGAAAAAGACTTTGAAGCACCTATGCTGGAAGATCCTGGG GTTTACTCCAGCCAGAAAGCTTCAAACTGTATACAGGAGGATTCTTGTCCAGCATACATGCTAAAGTCTGAGGAATGCTTAAAGAAGGAAAGAGATAGAG TTTCAAATTATTTGCATTTAAGCAGTGAGGCCAAATTAGTTGAGAAAGTGCAACATGAGCTGTTGGTTAATTTCTCAACTCAGTTGCTTGACAAAGAGAA TTCTGGATGTCGTGCACTGCTCAGGGATGATAAGGTAGAAGATCTCTCTCGGATGTATAGGCTTTATCACAAAATAACTAAAGGTTTAGATCCTGTTGCA ACCATCTTTAAGCAGCATATTACTGCTGAAGGCACAGTATTGGTACAGCAGGCAGAGGATGCTGCGAGTAACCAGTCTACAAACGGTGGTGGCCAAGAAC AGGTGCTCATAAGGAAAGTAATTGAGATCCATGACAAGTATCTTGCTTATGTTGGCGATTGTTTCCAAAATCATACCTTGTTTCACAAGGCAATGAAAGA AGCATTTGAGATATTCTGCAACAAAACTGTCGGTGGAAGTCCTAGTGCTGAACTTCTTGCAACCTTCTGCGATAATATCCTCAAGAAAGGTGGCAGTGAG AAGCTCAGTGATGAAGCAATTGAGGAAATACTGGAGAAGGTTGTTAAACTGCTAGCATATATTAGTGACAAGGACCTTTTTGCTGAATTCTACAGAAAAA AACTTGCACGGCGTCTGCTCTTTGAACGTAGTGCCAATGAAGAGCACGAAAAGAGTATTTTAACTAAGCTTAAGCAGCAATGTGGTGGCCAATTCACTTC AAAGATGGAAGGAATGGTCACTGATTTAACGCTAGCAAAGGATAACCAAGCTGAATTTGAGAATTATCTATCTAACAATCCAAGTGCACATCCTGGGATC GACTTGTCCGTCAATGTCCTTACAACCGGGTTTTGGCCCAGCTATAAGTCTTCTGATTTGAATCTTCCTTCGGAGATGGTTAGGGGTGTCCAAGTTTTCA AGGAATTTTATGACACAAAAAGTAAGCACAGGAAGCTTACATGGATATACTCTCTTGGATCTTGTCAACTCACTGGGAAGTTTGATCAAAAAAATATCGA GATGGTCGTCTCTACATATCAGGCTGCCATACTTTTGCTGTTCAATACCTCGGATAGACTTAGTTACTCCGAGATCATGACCCAGTCAAACTTGGGCCAT GAGGACTTGGTTAGACTGCTTCATTCTTTATCTTGTGCCAAATATAAAATCCTTATCAAGGAGCCAAGTACAAAGACCGTTTCCCAAACAGATATCTTCG AGTTCAATCCGAAGTTTACTGATAGAATGAGGAGAATCAAGATTCCTCTTCCCGTGGTGGACGAAAGGAAGAAGGTTGTAGAGGATGTTGACAAGGACAG GAGGTATGCGATAGACGCTGCCATTGTGCGTATAATGAAGAGCAGGAAAGTGTTGGGGCATCAACAGTTGGTGATGGAGTGTGTCGAGCAGCTCAGCCGG ATGTTCAAGCCGGACATTAAAGCTATCAAGAAGCGGATGGAGGATCTAATTGCCAGAGACTATCTGGAGAGAGACAAGGACAACGCCAACCTGTTCCGGT ACTTGGCCTAG
AA sequence Show only first row Show all	>Lus10004334 pacid=23161742 polypeptide=Lus10004334 locus=Lus10004334.g ID=Lus10004334.BGIv1.0 annot-version=v1.0 MERKVIELDQGWDYMQNGITKLKRILEGGVEQFNSEEYMMLYTTIYNMCTQKPPHDYSQQLYDKYREAFEEYISSTVLPAIREKHDEFMLRELVKRWANH KLMVRWLSRFFHYLDRYFIARRSLPALNVVGLTCFRTLVYEEINVKARNAVIALIDKERESEQIDRALLKNVLDIFVEIGMGQMDCYEKDFEAPMLEDPG VYSSQKASNCIQEDSCPAYMLKSEECLKKERDRVSNYLHLSSEAKLVEKVQHELLVNFSTQLLDKENSGCRALLRDDKVEDLSRMYRLYHKITKGLDPVA TIFKQHITAEGTVLVQQAEDAASNQSTNGGGQEQVLIRKVIEIHDKYLAYVGDCFQNHTLFHKAMKEAFEIFCNKTVGGSPSAELLATFCDNILKKGGSE KLSDEAIEEILEKVVKLLAYISDKDLFAEFYRKKLARRLLFERSANEEHEKSILTKLKQQCGGQFTSKMEGMVTDLTLAKDNQAEFENYLSNNPSAHPGI DLSVNVLTTGFWPSYKSSDLNLPSEMVRGVQVFKEFYDTKSKHRKLTWIYSLGSCQLTGKFDQKNIEMVVSTYQAAILLLFNTSDRLSYSEIMTQSNLGH EDLVRLLHSLSCAKYKILIKEPSTKTVSQTDIFEFNPKFTDRMRRIKIPLPVVDERKKVVEDVDKDRRYAIDAAIVRIMKSRKVLGHQQLVMECVEQLSR MFKPDIKAIKKRMEDLIARDYLERDKDNANLFRYLA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G02570		AXR6, ATCUL1	AUXIN RESISTANT 6, cullin 1 (....		Lus10004334 [exp]	0	1
AT2G44610		RAB6, AtRABH1b,...	Ras-related small GTP-binding ...		Lus10043349 [exp]	6.5	0.8223
AT5G61500		ATATG3	autophagy 3 (APG3) (.1)		Lus10009026 [exp]	15.5	0.8525
AT1G27980		DPL1, ATDPL1	dihydrosphingosine phosphate l...		Lus10003129 [exp]	19.4	0.8521
AT3G49800			BSD domain-containing protein ...		Lus10011556 [exp]	22.2	0.8093
AT5G45130		ATRAB-F2A, RHA1...	ARABIDOPSIS RAB HOMOLOG F2A, R...		Lus10038334 [exp]	26.2	0.8293
AT1G04760		ATVAMP726	vesicle-associated membrane pr...		Lus10022804 [exp]	38.4	0.8125
AT2G31510		ATARI7, ARI7	ARABIDOPSIS ARIADNE 7, ARIADNE...		Lus10025566 [exp]	38.5	0.7903
AT3G52850		VSR1;1, GFS1, B...	VACUOLAR SORTING RECEPTOR 1;1,...		Lus10025220 [exp]	51.2	0.8190
AT2G14170		ALDH6B2	aldehyde dehydrogenase 6B2 (....		Lus10020459 [exp]	51.6	0.8036
AT2G14750		APK1, ATAKN1, A...	ADENOSINE-5'-PHOSPHOSULFATE \(...		Lus10014641 [exp]	56.0	0.7921

Compare expression of checked genes

Lus10004334 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.