Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G12330 407 / 2e-138 unknown protein AT5G12900 218 / 2e-64 unknown protein AT3G60680 62 / 3e-10 Plant protein of unknown function (DUF641) (.1) AT2G45260 57 / 1e-08 Plant protein of unknown function (DUF641) (.1) AT5G58960 54 / 1e-07 GIL1 GRAVITROPIC IN THE LIGHT, Plant protein of unknown function (DUF641) (.1), Plant protein of unknown function (DUF641) (.2), Plant protein of unknown function (DUF641) (.3) AT1G53380 53 / 3e-07 Plant protein of unknown function (DUF641) (.1), Plant protein of unknown function (DUF641) (.2), Plant protein of unknown function (DUF641) (.3) AT3G14870 52 / 8e-07 Plant protein of unknown function (DUF641) (.1), Plant protein of unknown function (DUF641) (.2), Plant protein of unknown function (DUF641) (.3) AT1G29300 44 / 0.0001 UNE1 unfertilized embryo sac 1, Plant protein of unknown function (DUF641) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028918 [exp] 556 / 0 AT1G12330 399 / 3e-137 unknown protein Lus10032197 [exp] 484 / 1e-168 AT1G12330 476 / 2e-165 unknown protein Lus10024559 [exp] 483 / 4e-168 AT1G12330 479 / 3e-166 unknown protein Lus10031820 [exp] 177 / 3e-49 AT5G12900 454 / 2e-154 unknown protein Lus10031249 [exp] 176 / 2e-48 AT5G12900 448 / 1e-151 unknown protein Lus10001989 [exp] 60 / 2e-09 AT2G45260 671 / 0.0 Plant protein of unknown function (DUF641) (.1) Lus10009284 [exp] 60 / 2e-09 AT3G60680 541 / 0.0 Plant protein of unknown function (DUF641) (.1) Lus10016444 [exp] 59 / 7e-09 AT5G58960 635 / 0.0 GRAVITROPIC IN THE LIGHT, Plant protein of unknown function (DUF641) (.1), Plant protein of unknown function (DUF641) (.2), Plant protein of unknown function (DUF641) (.3) Lus10030291 [exp] 58 / 8e-09 AT2G45260 668 / 0.0 Plant protein of unknown function (DUF641) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G115700 [exp] 473 / 4e-164 AT1G12330 503 / 2e-175 unknown protein Potri.001G117000 [exp] 461 / 2e-159 AT1G12330 465 / 1e-160 unknown protein Potri.003G210200 [exp] 213 / 2e-61 AT5G12900 603 / 0.0 unknown protein Potri.001G016600 [exp] 199 / 3e-57 AT5G12900 555 / 0.0 unknown protein Potri.002G145900 [exp] 64 / 1e-10 AT2G45260 692 / 0.0 Plant protein of unknown function (DUF641) (.1) Potri.002G145000 [exp] 57 / 2e-08 AT3G60680 494 / 4e-172 Plant protein of unknown function (DUF641) (.1) Potri.014G067600 [exp] 56 / 2e-08 AT2G45260 462 / 3e-163 Plant protein of unknown function (DUF641) (.1) Potri.009G041000 [exp] 54 / 3e-07 AT5G58960 466 / 2e-159 GRAVITROPIC IN THE LIGHT, Plant protein of unknown function (DUF641) (.1), Plant protein of unknown function (DUF641) (.2), Plant protein of unknown function (DUF641) (.3) Potri.001G387700 [exp] 53 / 3e-07 AT1G53380 524 / 0.0 Plant protein of unknown function (DUF641) (.1), Plant protein of unknown function (DUF641) (.2), Plant protein of unknown function (DUF641) (.3) Potri.014G066600 [exp] 52 / 7e-07 AT3G60680 522 / 0.0 Plant protein of unknown function (DUF641) (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10004335 pacid=23161733 polypeptide=Lus10004335 locus=Lus10004335.g ID=Lus10004335.BGIv1.0 annot-version=v1.0 ATGACGCCTGCAGCATCATCTTCTCCAGTTTCTTCCTCTTCTCGTTCCCCTGCTTCCCTCAACCCTTCTTCTCCATTGTCCTCTTCCTCTTATCACTTCT CCCGCTTCACTCCCATTCAAGAATGCGAGACTGAAGATCATTACAGCGACTCCACAAAATCCACTCCTTATAAGCACCACCAAACTCCCCTCCATGAAAA GGCTCCCGCCGCCGCTCGCCGGAGAAGTAAAAAATCCGGCAGGGAGAATTTCCACCATGACGATGACGGCTCTGTATCCTGCATTGACTGCCACCCCCAC GCTAGAGAGAGGATTTCCGTGATTCCGATGCAGTACAACAATGGCGGATTCAGCAATAAACACTCGTTTCCGAGCCCTAACGTTATCTTCAAGTCTATTT TGTCATCCCTCACTAAAAAATCCCCCAAATCATCCTCCCCCGCCGCCACCGGCGGCGACTACGGCGGCATCTCTTCTGCCAGAGAAGAACAGTGGAAGAT CGCGGTGGCAGAGCTCTCCCACAAGCTGATCCAGACGACACGGAAGCGAGACGAGGCGATTCTAGAAGCTTCTCGGCTGAAACACTCCATGGCAGAGCTT GAAAAGAAGCTCAACAAGCTCGAGATCTACTGCCACAACTTGAGCTCCGGACTCGAAGAATGCAACACCACTATAAACAACAACATCAACAACAACTCTA ACAAGATCATCGTCGACCGATTTCTGGTCTCCGTCTCCGAATCGAGATCCTCCGTCCGAATCCTGGCCCGATCTTTAACTTCACAGCTCTCGCAGTACAA CGCAGGCAAGGTGTTCGACAAAATGTCGACTCCACCTCTCCACCCCTGCGACGTCAAAATCTCATCCTCCTCCTCCACCAAAAACCCCAAAGCGGTTCTA ATCCACCTGGAGGCGCTTCTCAACAGGATTTTCTTCGAAGACTTCGAAACCCTCGGGTTCCAGAAAAGCACCCCTGCCCAAATCCTGAACCCAGTCGACA GATGCGAATCCAATTACGCGACGTTCGAGGCGCTGAAGGAGGAGCTGACGTGGGAGGAAGTTTTAACGAAAGGGACTCGCCATTTCAGCGAGCAGTTCAG CAGGTTCTGCGACCGGAAGATGAACGAGATCGTCGCCGTGCTGGGCTGGAACAGAGCATGGCCTGAGCCGCTGCTTCAGGCTTTCTTCGGCGCTTCCAAA GCTGTATGGCTGGTTCACTTGCTGGCCAATTCGGTTCACCCCGGTCTTTCCGTGTTTCGAGTCGATCAAGGGATGGAGTTCGATTCGATTTACATGGACG ATATGGGTGGGGACCGAGCCAAGAGGCTGGTCCCCACCACAGTCCGGCTCATGGTCACGCCGGGGTTCTACATCTACGGGAATGTAATCAAGTGCAAGGT TGTATGTAGATACCTCAGTATCAGTAACCATGCTGCATGA
AA sequence Show only first row Show all	>Lus10004335 pacid=23161733 polypeptide=Lus10004335 locus=Lus10004335.g ID=Lus10004335.BGIv1.0 annot-version=v1.0 MTPAASSSPVSSSSRSPASLNPSSPLSSSSYHFSRFTPIQECETEDHYSDSTKSTPYKHHQTPLHEKAPAAARRRSKKSGRENFHHDDDGSVSCIDCHPH ARERISVIPMQYNNGGFSNKHSFPSPNVIFKSILSSLTKKSPKSSSPAATGGDYGGISSAREEQWKIAVAELSHKLIQTTRKRDEAILEASRLKHSMAEL EKKLNKLEIYCHNLSSGLEECNTTINNNINNNSNKIIVDRFLVSVSESRSSVRILARSLTSQLSQYNAGKVFDKMSTPPLHPCDVKISSSSSTKNPKAVL IHLEALLNRIFFEDFETLGFQKSTPAQILNPVDRCESNYATFEALKEELTWEEVLTKGTRHFSEQFSRFCDRKMNEIVAVLGWNRAWPEPLLQAFFGASK AVWLVHLLANSVHPGLSVFRVDQGMEFDSIYMDDMGGDRAKRLVPTTVRLMVTPGFYIYGNVIKCKVVCRYLSISNHAA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G12330			unknown protein		Lus10004335 [exp]	0	1
AT5G06270			unknown protein		Lus10021305 [exp]	4.2	0.7756
AT2G40840		DPE2	disproportionating enzyme 2 (....		Lus10035408 [exp]	4.4	0.8084
AT5G65980			Auxin efflux carrier family pr...		Lus10035978 [exp]	5.3	0.7861
AT5G01790			unknown protein		Lus10030550 [exp]	6.2	0.7964
AT1G69420			DHHC-type zinc finger family p...		Lus10026632 [exp]	7.4	0.7785
AT2G40840		DPE2	disproportionating enzyme 2 (....		Lus10031010 [exp]	8.1	0.7877
AT3G28420			Putative membrane lipoprotein ...		Lus10039459 [exp]	17.5	0.7733
AT5G03040		IQD2	IQ-domain 2 (.1.2.3)		Lus10036508 [exp]	21.4	0.7721
AT2G17525			Pentatricopeptide repeat (PPR)...		Lus10016688 [exp]	25.4	0.7335
AT4G39330		AtCAD1, ATCAD9	cinnamyl alcohol dehydrogenase...		Lus10002089 [exp]	27.7	0.7442

Compare expression of checked genes

Lus10004335 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.