Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G62740 819 / 0 Hop2 Hop2, stress-inducible protein, putative (.1) AT4G12400 807 / 0 Hop3 Hop3, stress-inducible protein, putative (.1.2) AT1G12270 531 / 0 Hop1 Hop1, stress-inducible protein, putative (.1) AT1G04190 88 / 1e-18 TPR3 tetratricopeptide repeat 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G08320 89 / 2e-18 TPR8 tetratricopeptide repeat 8, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT2G42810 84 / 9e-17 AtPP5, PP5.2, PP5, PAPP5 Arabidopsis thaliana protein phosphatase 5, protein phosphatase 5.2 (.1.2) AT3G04710 82 / 3e-16 TPR10 tetratricopeptide repeat 10, ankyrin repeat family protein (.1.2.3) AT4G30480 72 / 1e-13 TPR1, AtTPR1 tetratricopeptide repeat 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3) AT3G17970 68 / 1e-11 ATTOC64-III translocon at the outer membrane of chloroplasts 64-III (.1) AT4G22670 67 / 3e-11 ATHIP1, TPR11 tetratricopeptide repeat 11, HSP70-interacting protein 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028919 [exp] 1006 / 0 AT1G62740 890 / 0.0 Hop2, stress-inducible protein, putative (.1) Lus10032234 [exp] 931 / 0 AT1G62740 892 / 0.0 Hop2, stress-inducible protein, putative (.1) Lus10024597 [exp] 910 / 0 AT1G62740 886 / 0.0 Hop2, stress-inducible protein, putative (.1) Lus10041189 [exp] 92 / 6e-20 AT1G04190 516 / 0.0 tetratricopeptide repeat 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10018179 [exp] 92 / 1e-19 AT4G08320 389 / 9e-134 tetratricopeptide repeat 8, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10025656 [exp] 91 / 2e-19 AT4G08320 379 / 9e-130 tetratricopeptide repeat 8, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10003260 [exp] 85 / 5e-17 AT3G04710 587 / 0.0 tetratricopeptide repeat 10, ankyrin repeat family protein (.1.2.3) Lus10021905 [exp] 83 / 5e-17 AT1G04190 515 / 0.0 tetratricopeptide repeat 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10006559 [exp] 84 / 9e-17 AT3G04710 581 / 0.0 tetratricopeptide repeat 10, ankyrin repeat family protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G113400 [exp] 844 / 0 AT4G12400 830 / 0.0 Hop3, stress-inducible protein, putative (.1.2) Potri.001G119500 [exp] 837 / 0 AT4G12400 864 / 0.0 Hop3, stress-inducible protein, putative (.1.2) Potri.005G177400 [exp] 94 / 4e-20 AT4G08320 406 / 1e-139 tetratricopeptide repeat 8, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.008G156500 [exp] 92 / 4e-20 AT1G04190 540 / 0.0 tetratricopeptide repeat 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.010G082900 [exp] 91 / 1e-19 AT1G04190 540 / 0.0 tetratricopeptide repeat 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G054800 [exp] 84 / 5e-17 AT3G04710 611 / 0.0 tetratricopeptide repeat 10, ankyrin repeat family protein (.1.2.3) Potri.013G042300 [exp] 83 / 1e-16 AT3G04710 619 / 0.0 tetratricopeptide repeat 10, ankyrin repeat family protein (.1.2.3) Potri.014G141800 [exp] 82 / 5e-16 AT2G42810 895 / 0.0 Arabidopsis thaliana protein phosphatase 5, protein phosphatase 5.2 (.1.2) Potri.018G100700 [exp] 77 / 2e-15 AT4G30480 303 / 8e-104 tetratricopeptide repeat 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3) Potri.006G178900 [exp] 77 / 3e-15 AT4G30480 275 / 1e-92 tetratricopeptide repeat 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF00515 [flax] [poplar] TPR_1 Tetratricopeptide repeat
Representative CDS sequence Show only first row Show all	>Lus10004336 pacid=23161732 polypeptide=Lus10004336 locus=Lus10004336.g ID=Lus10004336.BGIv1.0 annot-version=v1.0 ATGGCGGACGAAGCCAAGGCCAAGGGCAACGCTGCGTTCTCCTCCGGGGACTACTCCGCCGCCATCAAGCACTTCTCCGATGCCATCGCCCTCGCACCCA CCAACCACGTCCTCTACTCTAATCGATCCGCCGCCCACGCCTCCCTCCAGAACTACGCCGACGCATTAACCGACGCCAAGAAGACCGTTGAGCTCAAGCC TGACTGGTCGAAAGGCTACTCACGGCTAGGCGCAGCTCATCAAGGTTTGAGCCAGTTCCAGGACGCTATCGCTGCGTTCAAGAAGGGGCTCGAGCTTGAT CCTAACAACGAAGCGTTGAAGTCCGGATTGGCTGATGCTCAGGCTGCTTCTTCTTCTTCGAGGTCTAGAGCTGCTCCTCAGGGGCCTAATCCGTTCGGCG ATGCGTTTTCCGGGCCGGAGATGTGGGCGAAGCTGACGGCGGATCCTTCTACTAGGATTTTTTTGCAGCAGCCGGATTTTGTTAATATGATGAAGGAGAT TCAGAAGAATCCCACCAATTTGAATCTGTATCTGAAGGACAAGAGGGTGATGCAAGCTTTGGGAGTTTTGCTGAATGTGAAGTTGAGAACAGCAGAAAGT CCAGCAGACATGGACATTCTGGAGGCGGAGGCTGAGTCGTCTCCTCCGCCGCCGCCTGAGAAGAAGACTGCTGATTGGGAGGAGAAGACTCGCGAGCCTG AACCGGAGCCTATGGACGTTTCGGAGGAAGAAAAAGAAGCGAGAGAGAGGAAAGCTCAGGCCTTGAAGGAGAAGGACGCTGGGAATGCTGCTTACAAGAA GAAGGATTTCGAGACTGCAATTGCGCACTACACCAAGGCTATGGAGCTCGATGACGGAGATATCTCGTTTATGACGAACCGTGCTGCTGTCTACCTAGAG ATGGGCAAGAGCTTGAATATGTCGCGCATAGGCGAAACTCAGTCCGGTTTGGATGCTGTCTGGGACGTGGTTTCTAATGATGGTTCTGTTTTGTTATCTT TTCAGTATGAAGAATGTATCAAAGATTGTGACAAAGCCGTGGAACGTGGAAGGGAGCTCAGATCAGATTTTAAGATGGTTGCAAGAGCTTTGACAAGGAA GGGATCTGCCTTAGTTAAGCTGGCTAAAAGCTCAAAGGACTATGAGCCGGCCATCGAGACCTTCCAAAAGGCCCTGACCGAGCACCGTAATCCAGACACA TTGAAGAAACTAAATGAAGCCGAGAAAGCCAAGAAAGACCTGGAACAACAAGAGTACTTCGATCCCCAGTTGGCCGATGAGGCACGGGAGAAAGGAAACG AATGCTTCAAGGAGCAAAAATATCCTGATGCTGTTAGACATTACACAGAGGCGATTAAAAGAAACCCGAAGGATCATAAGGCATACAGCAACCGAGCTGC TTGCTACACGAAACTAACTGCCATGCCCGAGGGATTAAAAGATGCAGAAAAGTGCATTGAGCTTGATCCAACTTTTGCTAAAGGTTACACAAGGAAAGGT GCTATTCAGTTCTTCATGAAAGAGTATGAAAAGGCTATGGAGACCTATCAAGAGGGACTGAAACACGATCCTCGGAATCAAGAATTGCTCGATGGCGTTA GAAGATGCGTTGAGCAACTCAACAAGGCCAGTCGAGGTGATCTGAGCCCCGAAGAGCTGAAAGAGAGACAGGCGAAGGGAATGCAGGACCCTGAAGTTCA GAACATCTTATCTGATCCTGTCATGAGACAAGTTCTAAGCGATTTACAGGAGAACCCAAAGGCAGCGCAAGAGCACATGAAGAACCCCATGGTGATGAAC AAGATCCAAAAGCTTGTGAATGCTGGCATCATCCAAGAGCAATGGTCGCAAGAGGGAACACCAACGATTTATGGGCGAGGCAGTTCTAGACTTCTCGTCG GTTTCCAAGCAATGAAACGAATTTCCAATGAACTCGTGGCCTCTCTGTGTCGGAGCAAGATGGAGGAGGATGAGATGGACGTTTCATACAGTGAAGGGAA GATCATGTGCAAGCCTGGGCCAGCCAACTGA
AA sequence Show only first row Show all	>Lus10004336 pacid=23161732 polypeptide=Lus10004336 locus=Lus10004336.g ID=Lus10004336.BGIv1.0 annot-version=v1.0 MADEAKAKGNAAFSSGDYSAAIKHFSDAIALAPTNHVLYSNRSAAHASLQNYADALTDAKKTVELKPDWSKGYSRLGAAHQGLSQFQDAIAAFKKGLELD PNNEALKSGLADAQAASSSSRSRAAPQGPNPFGDAFSGPEMWAKLTADPSTRIFLQQPDFVNMMKEIQKNPTNLNLYLKDKRVMQALGVLLNVKLRTAES PADMDILEAEAESSPPPPPEKKTADWEEKTREPEPEPMDVSEEEKEARERKAQALKEKDAGNAAYKKKDFETAIAHYTKAMELDDGDISFMTNRAAVYLE MGKSLNMSRIGETQSGLDAVWDVVSNDGSVLLSFQYEECIKDCDKAVERGRELRSDFKMVARALTRKGSALVKLAKSSKDYEPAIETFQKALTEHRNPDT LKKLNEAEKAKKDLEQQEYFDPQLADEAREKGNECFKEQKYPDAVRHYTEAIKRNPKDHKAYSNRAACYTKLTAMPEGLKDAEKCIELDPTFAKGYTRKG AIQFFMKEYEKAMETYQEGLKHDPRNQELLDGVRRCVEQLNKASRGDLSPEELKERQAKGMQDPEVQNILSDPVMRQVLSDLQENPKAAQEHMKNPMVMN KIQKLVNAGIIQEQWSQEGTPTIYGRGSSRLLVGFQAMKRISNELVASLCRSKMEEDEMDVSYSEGKIMCKPGPAN

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G62740		Hop2	Hop2, stress-inducible protein...		Lus10004336 [exp]	0	1
AT4G25200		ATHSP23.6-MITO	mitochondrion-localized small ...		Lus10031730 [exp]	1.0	0.9848
AT5G02500		AtHsp70-1, AT-H...	HEAT SHOCK PROTEIN 70-1, ARABI...		Lus10023418 [exp]	1.4	0.9794
AT5G64510		TIN1	tunicamycin induced 1, unknown...		Lus10020502 [exp]	2.4	0.9617
					Lus10042011 [exp]	3.0	0.9545
AT3G16050		A37, ATPDX1.2	ARABIDOPSIS THALIANA PYRIDOXIN...		Lus10037545 [exp]	3.2	0.9663
AT1G62740		Hop2	Hop2, stress-inducible protein...		Lus10028919 [exp]	4.6	0.9583
AT3G11690			unknown protein		Lus10021243 [exp]	4.9	0.9227
AT5G52640		AtHsp90-1, ATHS...	HEAT SHOCK PROTEIN 83, HEAT SH...		Lus10027517 [exp]	5.3	0.9671
AT5G52640		AtHsp90-1, ATHS...	HEAT SHOCK PROTEIN 83, HEAT SH...		Lus10027518 [exp]	6.0	0.9683
AT5G06920		FLA21	FASCICLIN-like arabinogalactan...		Lus10019675 [exp]	7.6	0.9173

Compare expression of checked genes

Lus10004336 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.