Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G12410 110 / 2e-31 SAUR-like auxin-responsive protein family (.1) AT4G22620 103 / 5e-29 SAUR-like auxin-responsive protein family (.1) AT2G45210 95 / 2e-25 SAUR-like auxin-responsive protein family (.1) AT3G60690 90 / 2e-23 SAUR-like auxin-responsive protein family (.1) AT4G38850 80 / 2e-20 SAUR-AC1, ATSAUR15, ATSR15AU, SAUR15, SAUR_AC1 SMALL AUXIN UP RNA 1 FROM ARABIDOPSIS THALIANA ECOTYPE COLUMBIA, ARABIDOPSIS COLUMBIA SAUR GENE 1, ARABIDOPSIS THALIANA SMALL AUXIN UPREGULATED 15, SAUR-like auxin-responsive protein family (.1) AT3G61900 79 / 2e-19 SAUR-like auxin-responsive protein family (.1) AT3G03820 76 / 2e-18 SAUR-like auxin-responsive protein family (.1) AT2G46690 75 / 3e-18 SAUR-like auxin-responsive protein family (.1) AT3G03850 75 / 3e-18 SAUR-like auxin-responsive protein family (.1) AT5G18060 73 / 1e-17 SAUR-like auxin-responsive protein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028920 [exp] 149 / 1e-47 AT4G12410 106 / 1e-30 SAUR-like auxin-responsive protein family (.1) Lus10024600 [exp] 131 / 1e-39 AT4G12410 149 / 3e-46 SAUR-like auxin-responsive protein family (.1) Lus10032237 [exp] 127 / 9e-38 AT4G12410 149 / 2e-46 SAUR-like auxin-responsive protein family (.1) Lus10009286 [exp] 89 / 1e-22 AT3G60690 150 / 2e-46 SAUR-like auxin-responsive protein family (.1) Lus10015879 [exp] 88 / 2e-22 AT3G60690 151 / 7e-47 SAUR-like auxin-responsive protein family (.1) Lus10030295 [exp] 86 / 6e-22 AT2G45210 131 / 1e-39 SAUR-like auxin-responsive protein family (.1) Lus10007560 [exp] 74 / 7e-18 AT4G34770 139 / 3e-44 SAUR-like auxin-responsive protein family (.1) Lus10010110 [exp] 74 / 1e-17 AT2G46690 124 / 1e-37 SAUR-like auxin-responsive protein family (.1) Lus10012185 [exp] 72 / 3e-17 AT4G34770 139 / 3e-44 SAUR-like auxin-responsive protein family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G113100 [exp] 113 / 1e-32 AT4G12410 149 / 1e-46 SAUR-like auxin-responsive protein family (.1) Potri.001G119900 [exp] 103 / 8e-29 AT4G12410 140 / 8e-43 SAUR-like auxin-responsive protein family (.1) Potri.014G066900 [exp] 95 / 2e-25 AT3G60690 191 / 9e-63 SAUR-like auxin-responsive protein family (.1) Potri.002G145300 [exp] 94 / 6e-25 AT3G60690 174 / 4e-56 SAUR-like auxin-responsive protein family (.1) Potri.009G126700 [exp] 74 / 4e-18 AT4G38840 126 / 3e-39 SAUR-like auxin-responsive protein family (.1) Potri.009G127400 [exp] 74 / 5e-18 AT4G34770 111 / 3e-33 SAUR-like auxin-responsive protein family (.1) Potri.014G103300 [exp] 73 / 2e-17 AT2G46690 152 / 2e-49 SAUR-like auxin-responsive protein family (.1) Potri.009G126500 [exp] 72 / 3e-17 AT5G18020 124 / 1e-38 SAUR-like auxin-responsive protein family (.1) Potri.009G126300 [exp] 72 / 3e-17 AT5G18060 123 / 2e-38 SAUR-like auxin-responsive protein family (.1) Potri.012G023400 [exp] 72 / 7e-17 AT2G46690 125 / 4e-38 SAUR-like auxin-responsive protein family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02519 [flax] [poplar] Auxin_inducible Auxin responsive protein
Representative CDS sequence Show only first row Show all	>Lus10004337 pacid=23161720 polypeptide=Lus10004337 locus=Lus10004337.g ID=Lus10004337.BGIv1.0 annot-version=v1.0 ATGAAGCTGCGAAAGAAAGTTGGGACGGCGGTAAAGTGGATTGCCCGACCCGGAAGAAACGGAATCCTGTCTCTGATCCGAATCATGCGGCGGACCTTGA ATAGCTCTACTGTCGGATTGAATTCAGATCGGGGCGTGTGTATTCAGATGGGTCGATTAATAGCAGAGGAGGTGCCGCCGAGGGGCCACTTGGCGGTCTA CGTCGGGGAGTCCGACGACGAGAAGAGGCGGGTGGTGGTACCCGTGTTTTACTTAAACAACCCGCTATTCGGGGAGCTACTCAAGGAGGCGGAGCGGGTT TACGGGTTTGATCGTCCGGGCGGGATCAGTATCCCGTGTGGGTATTCCACGTTTGAGAAGGTTGAGATGAAAATCAATGAACGGGACGGGTTTGGTCGCC GCCGGCGACACTTTTTGCGGCGGTGGGGGTTCATGAGATAG
AA sequence Show only first row Show all	>Lus10004337 pacid=23161720 polypeptide=Lus10004337 locus=Lus10004337.g ID=Lus10004337.BGIv1.0 annot-version=v1.0 MKLRKKVGTAVKWIARPGRNGILSLIRIMRRTLNSSTVGLNSDRGVCIQMGRLIAEEVPPRGHLAVYVGESDDEKRRVVVPVFYLNNPLFGELLKEAERV YGFDRPGGISIPCGYSTFEKVEMKINERDGFGRRRRHFLRRWGFMR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G12410			SAUR-like auxin-responsive pro...		Lus10004337 [exp]	0	1
AT4G39830			Cupredoxin superfamily protein...		Lus10037103 [exp]	4.5	0.7295
AT5G65660			hydroxyproline-rich glycoprote...		Lus10002158 [exp]	9.4	0.7331
AT1G56230			Protein of unknown function (D...		Lus10020675 [exp]	16.4	0.6283
AT5G18930		BUD2, SAMDC4	BUSHY AND DWARF 2, Adenosylmet...		Lus10021951 [exp]	21.2	0.6549
AT5G24090		ATCHIA	chitinase A (.1)		Lus10001868 [exp]	23.9	0.5829
					Lus10004020 [exp]	32.2	0.6455
AT3G07425			unknown protein		Lus10025871 [exp]	36.3	0.6461
AT2G23060			Acyl-CoA N-acyltransferases (N...		Lus10025191 [exp]	96.0	0.6262
AT4G35150			O-methyltransferase family pro...		Lus10012408 [exp]	149.2	0.5659

Compare expression of checked genes

Lus10004337 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.