Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G62700 289 / 9e-96 NAC ANAC026, VND5 VASCULAR RELATED NAC-DOMAIN PROTEIN 5, Arabidopsis NAC domain containing protein 26 (.1) AT1G12260 285 / 2e-94 NAC ANAC007, VND4, EMB2749 VASCULAR RELATED NAC-DOMAIN PROTEIN 4, EMBRYO DEFECTIVE 2749, NAC 007 (.1) AT5G66300 238 / 3e-77 NAC ANAC105, VND3 VASCULAR-RELATED NAC-DOMAIN 3, Arabidopsis NAC domain containing protein 105, NAC domain containing protein 105 (.1) AT4G36160 239 / 9e-77 NAC ANAC076, VND2 VASCULAR-RELATED NAC-DOMAIN 2, NAC domain containing protein 76 (.1) AT2G18060 228 / 3e-72 NAC ANAC037, VND1 Arabidopsis NAC domain containing protein 37, vascular related NAC-domain protein 1 (.1) AT5G62380 208 / 6e-65 NAC ANAC101, VND6 VASCULAR-RELATED NAC-DOMAIN 6, NAC-domain protein 101 (.1) AT2G46770 202 / 4e-62 NAC NST1, ANAC043, EMB2301 NAC SECONDARY WALL THICKENING PROMOTING FACTOR1, Arabidopsis NAC domain containing protein 43, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) AT1G71930 193 / 3e-59 NAC VND7, ANAC030 Arabidopsis NAC domain containing protein 30, vascular related NAC-domain protein 7 (.1) AT1G33280 187 / 4e-57 NAC BRN1, ANAC015, NST5 BEARSKIN 1, NAC domain containing protein 15 (.1) AT3G61910 187 / 1e-56 NAC NST2, ANAC066 NAC SECONDARY WALL THICKENING PROMOTING FACTOR2, NAC domain protein 66 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032238 [exp] 327 / 1e-110 AT1G12260 432 / 6e-151 VASCULAR RELATED NAC-DOMAIN PROTEIN 4, EMBRYO DEFECTIVE 2749, NAC 007 (.1) Lus10024601 [exp] 327 / 2e-110 AT1G12260 436 / 3e-152 VASCULAR RELATED NAC-DOMAIN PROTEIN 4, EMBRYO DEFECTIVE 2749, NAC 007 (.1) Lus10031142 [exp] 258 / 1e-84 AT1G12260 351 / 4e-120 VASCULAR RELATED NAC-DOMAIN PROTEIN 4, EMBRYO DEFECTIVE 2749, NAC 007 (.1) Lus10031721 [exp] 250 / 2e-81 AT1G12260 353 / 4e-121 VASCULAR RELATED NAC-DOMAIN PROTEIN 4, EMBRYO DEFECTIVE 2749, NAC 007 (.1) Lus10028372 [exp] 211 / 8e-66 AT2G18060 349 / 4e-119 Arabidopsis NAC domain containing protein 37, vascular related NAC-domain protein 1 (.1) Lus10041822 [exp] 210 / 3e-65 AT2G18060 352 / 3e-120 Arabidopsis NAC domain containing protein 37, vascular related NAC-domain protein 1 (.1) Lus10017915 [exp] 198 / 2e-61 AT1G71930 314 / 4e-107 Arabidopsis NAC domain containing protein 30, vascular related NAC-domain protein 7 (.1) Lus10009939 [exp] 190 / 6e-59 AT1G79580 314 / 4e-107 NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.2), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.3) Lus10017340 [exp] 188 / 2e-56 AT2G46770 347 / 7e-118 NAC SECONDARY WALL THICKENING PROMOTING FACTOR1, Arabidopsis NAC domain containing protein 43, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G120000 [exp] 306 / 6e-103 AT1G12260 455 / 1e-160 VASCULAR RELATED NAC-DOMAIN PROTEIN 4, EMBRYO DEFECTIVE 2749, NAC 007 (.1) Potri.003G113000 [exp] 301 / 5e-101 AT1G12260 439 / 3e-154 VASCULAR RELATED NAC-DOMAIN PROTEIN 4, EMBRYO DEFECTIVE 2749, NAC 007 (.1) Potri.012G126500 [exp] 272 / 1e-89 AT1G12260 348 / 3e-118 VASCULAR RELATED NAC-DOMAIN PROTEIN 4, EMBRYO DEFECTIVE 2749, NAC 007 (.1) Potri.015G127400 [exp] 269 / 2e-88 AT1G12260 378 / 4e-130 VASCULAR RELATED NAC-DOMAIN PROTEIN 4, EMBRYO DEFECTIVE 2749, NAC 007 (.1) Potri.007G014400 [exp] 236 / 2e-75 AT2G18060 427 / 1e-149 Arabidopsis NAC domain containing protein 37, vascular related NAC-domain protein 1 (.1) Potri.005G116800 [exp] 229 / 6e-73 AT2G18060 441 / 2e-155 Arabidopsis NAC domain containing protein 37, vascular related NAC-domain protein 1 (.1) Potri.002G178700 [exp] 207 / 4e-64 AT2G46770 366 / 1e-125 NAC SECONDARY WALL THICKENING PROMOTING FACTOR1, Arabidopsis NAC domain containing protein 43, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Potri.013G113100 [exp] 195 / 5e-60 AT1G71930 309 / 1e-104 Arabidopsis NAC domain containing protein 30, vascular related NAC-domain protein 7 (.1) Potri.019G083600 [exp] 194 / 8e-60 AT1G71930 320 / 4e-109 Arabidopsis NAC domain containing protein 30, vascular related NAC-domain protein 7 (.1) Potri.014G104800 [exp] 195 / 2e-59 AT2G46770 380 / 3e-131 NAC SECONDARY WALL THICKENING PROMOTING FACTOR1, Arabidopsis NAC domain containing protein 43, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02365 [flax] [poplar] NAM No apical meristem (NAM) protein
Representative CDS sequence Show only first row Show all	>Lus10004338 pacid=23161750 polypeptide=Lus10004338 locus=Lus10004338.g ID=Lus10004338.BGIv1.0 annot-version=v1.0 ATGGATTCATCGTCCAAGGTTCCCCCGGGCTTCAGGTTCCATCCGACCGATGAAGAACTCGTCGATTACTATCTCCGGAAAAAAATTGCTTCCAAACGGA TAGATTTGGATGTCATTAAAGAAGTAGATTTGTACAAGATTGAGCCTTGGGATCTTCAAGAATTGTGCAAGATTGGAACGGATGATCAGAGCGAGTGGTA CTTCTTCAGCCACAAGGACAAGAAATATCCAACCGGAACTCGTACAAACCGAGCAACAAAATCCGGGTTTTGGAAAGCCACCGGAAGAGACAAGTCTATA TATTGTAGGCAAAGCTTGGTTGGGATGAGAAAGACATTGGAAGAAGGATGGGTGGTTTGTAGGGTATTCAAGAAGAAGCTACCTACTACAATGAGGAGAC TTGGAGATCAATATGACTCCCCCATTACTTGGTACAATGATCAAGCTTCTCTAGTACTCCAAGAACTCGACTCTCCAAGCGCGATCTCTCATCATCACCC TTATCCTTCGCTACCACCGTCTCGCCTACTTCTTCAGCAACAACAACAAGATTACTTGCACTGCAAGCAAGAACTTGATCAGTTACAGCACAATCATGTG CATCGTCGCCCTGAGCCTAGCTTCCTCCAGCTTCCCCAGCTCGAAAGCCCCACAGTCCCGACCAGTACTGCAAATGGCAACACCTCATATTCATCGATGG TTCCTAGTTACCGTCCATGCGAACACAACTTGAGTAGTACTCCTCATGCTAGCACATTGAACGAGACCACCACGGATTGGAGAGTAATGGACAAGTTTGT TGCATCTCAGCTGATCATGAGTCATGAGTTAGTAATTGCTAGTGGTTCCCATGATGAAATGAATAGCAACAACTTCTCATCAACCACTACCTCTTCATCC TCCTTCGACGATCAGCATCAAGTTGTGCAAGAGTGTGCCTCAATGTTGACTTTCCGCCGCGAGATTGATCTGTGGAAGTAG
AA sequence Show only first row Show all	>Lus10004338 pacid=23161750 polypeptide=Lus10004338 locus=Lus10004338.g ID=Lus10004338.BGIv1.0 annot-version=v1.0 MDSSSKVPPGFRFHPTDEELVDYYLRKKIASKRIDLDVIKEVDLYKIEPWDLQELCKIGTDDQSEWYFFSHKDKKYPTGTRTNRATKSGFWKATGRDKSI YCRQSLVGMRKTLEEGWVVCRVFKKKLPTTMRRLGDQYDSPITWYNDQASLVLQELDSPSAISHHHPYPSLPPSRLLLQQQQQDYLHCKQELDQLQHNHV HRRPEPSFLQLPQLESPTVPTSTANGNTSYSSMVPSYRPCEHNLSSTPHASTLNETTTDWRVMDKFVASQLIMSHELVIASGSHDEMNSNNFSSTTTSSS SFDDQHQVVQECASMLTFRREIDLWK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G62700	NAC	ANAC026, VND5	VASCULAR RELATED NAC-DOMAIN PR...		Lus10004338 [exp]	0	1
AT4G29100	bHLH	bHLH068	basic helix-loop-helix (bHLH) ...		Lus10011105 [exp]	2.8	0.7481
					Lus10022051 [exp]	3.9	0.7429
AT5G21060			Glyceraldehyde-3-phosphate deh...		Lus10034077 [exp]	4.7	0.7442
AT1G62760			Plant invertase/pectin methyle...		Lus10032232 [exp]	25.7	0.6517
AT5G56670			Ribosomal protein S30 family p...		Lus10028808 [exp]	26.3	0.7341
AT5G19530		ACL5	ACAULIS 5, S-adenosyl-L-methio...		Lus10010538 [exp]	30.4	0.6509
AT2G01060	GARP		myb-like HTH transcriptional r...		Lus10027806 [exp]	31.7	0.7106
AT3G16360		AHP4	HPT phosphotransmitter 4 (.1.2...		Lus10035596 [exp]	35.2	0.6596
AT5G42890		ATSCP2	sterol carrier protein 2 (.1)		Lus10021727 [exp]	35.8	0.7324
AT4G17085			Putative membrane lipoprotein ...		Lus10042735 [exp]	37.8	0.6809

Compare expression of checked genes

Lus10004338 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.