Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G12240 831 / 0 ATBETAFRUCT4, VAC-INV VACUOLAR INVERTASE, Glycosyl hydrolases family 32 protein (.1) AT1G62660 817 / 0 Glycosyl hydrolases family 32 protein (.1) AT3G13790 488 / 3e-166 ATCWINV1, ATBFRUCT1 ARABIDOPSIS THALIANA CELL WALL INVERTASE 1, Glycosyl hydrolases family 32 protein (.1.2) AT1G55120 449 / 9e-151 ATFRUCT5, ATCWINV3 6-fructan exohydrolase, beta-fructofuranosidase 5 (.1.2.3) AT3G13784 446 / 6e-150 ATCWINV5 cell wall invertase 5 (.1) AT5G11920 441 / 2e-148 ATCWINV6 6-&1-fructan exohydrolase (.1.2) AT3G52600 436 / 7e-146 ATCWINV2 cell wall invertase 2 (.1.2) AT2G36190 425 / 1e-141 ATCWINV4 cell wall invertase 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028922 [exp] 1279 / 0 AT1G12240 832 / 0.0 VACUOLAR INVERTASE, Glycosyl hydrolases family 32 protein (.1) Lus10024605 [exp] 1003 / 0 AT1G12240 805 / 0.0 VACUOLAR INVERTASE, Glycosyl hydrolases family 32 protein (.1) Lus10032242 [exp] 970 / 0 AT1G62660 800 / 0.0 Glycosyl hydrolases family 32 protein (.1) Lus10004031 [exp] 854 / 0 AT1G12240 783 / 0.0 VACUOLAR INVERTASE, Glycosyl hydrolases family 32 protein (.1) Lus10031144 [exp] 765 / 0 AT1G12240 729 / 0.0 VACUOLAR INVERTASE, Glycosyl hydrolases family 32 protein (.1) Lus10030278 [exp] 608 / 0 AT1G62660 562 / 0.0 Glycosyl hydrolases family 32 protein (.1) Lus10008392 [exp] 476 / 3e-161 AT3G13790 756 / 0.0 ARABIDOPSIS THALIANA CELL WALL INVERTASE 1, Glycosyl hydrolases family 32 protein (.1.2) Lus10017015 [exp] 466 / 2e-156 AT2G36190 683 / 0.0 cell wall invertase 4 (.1) Lus10037633 [exp] 462 / 3e-156 AT3G13790 704 / 0.0 ARABIDOPSIS THALIANA CELL WALL INVERTASE 1, Glycosyl hydrolases family 32 protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G112600 [exp] 949 / 0 AT1G12240 882 / 0.0 VACUOLAR INVERTASE, Glycosyl hydrolases family 32 protein (.1) Potri.003G126300 [exp] 891 / 0 AT1G12240 819 / 0.0 VACUOLAR INVERTASE, Glycosyl hydrolases family 32 protein (.1) Potri.015G127100 [exp] 768 / 0 AT1G62660 712 / 0.0 Glycosyl hydrolases family 32 protein (.1) Potri.006G227500 [exp] 489 / 1e-166 AT3G13790 660 / 0.0 ARABIDOPSIS THALIANA CELL WALL INVERTASE 1, Glycosyl hydrolases family 32 protein (.1.2) Potri.006G227400 [exp] 484 / 6e-165 AT3G13790 703 / 0.0 ARABIDOPSIS THALIANA CELL WALL INVERTASE 1, Glycosyl hydrolases family 32 protein (.1.2) Potri.006G210600 [exp] 474 / 9e-161 AT3G52600 770 / 0.0 cell wall invertase 2 (.1.2) Potri.016G077400 [exp] 462 / 3e-156 AT3G52600 755 / 0.0 cell wall invertase 2 (.1.2) Potri.016G077500 [exp] 455 / 2e-153 AT3G52600 751 / 0.0 cell wall invertase 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0004 [flax] [poplar] Concanavalin PF08244 [flax] [poplar] Glyco_hydro_32C Glycosyl hydrolases family 32 C terminal CL0143 [flax] [poplar] B_Fructosidase PF00251 [flax] [poplar] Glyco_hydro_32N Glycosyl hydrolases family 32 N-terminal domain CL0143 [flax] [poplar] PF11837 [flax] [poplar] DUF3357 Domain of unknown function (DUF3357)
Representative CDS sequence Show only first row Show all	>Lus10004340 pacid=23161745 polypeptide=Lus10004340 locus=Lus10004340.g ID=Lus10004340.BGIv1.0 annot-version=v1.0 ATGGCGGACAACAAACAGCCATTCCTTCCGGTCACCGGAGCCGAACCCTCGAAGAATCACGCACCGTCGTCGGGATCAAGAAAGAAACTTCTCCTCGCCG CGTTCGGCGGGATTTTCGTGGTCTGCTTAATCCTCGCCGGAGGAGGTTACGATAAATCCGGCCTCGTTAAATCCGCCAGATTCGGAGGCGGAGGAAGCGA TTTGGATGAGCCAGCTGGAAACGCAATCAGATCAGCTGTTTCTCGTGGGAAATCAGAAGGTGTGTCGGAGAAGGCCAATCTGCCGGAGCATCATCTTCTC CGCGGCGAGAACGCCGTCACGGAAGAGTTCCCGTGGAACAACAGCATGCTGTCGTGGCAGCGGACGGCGTTCCACTTTCAGCCTGAGAAGAATTGGATGA ACGGACCATTGTTCTACAAAGGATGGTACCATTTCTTCTACCAATACAACCCAAACGCCCCCGTTTGGGGGGACATCGTGTGGGGCCACGCCGTATCACG GGACCTAATCCATTGGCTCCACCTTCCATTAGCCATGGTCGCCGACCAATGGTACGACGTCAATGGCGTCTGGACCGGATCGGCAACAATACTCCCCAAC GGCAACCTTGTCATGCTCTACACCGGTTCGACAAACGAATCGGTCCAGGTTCAGAACCTAGCCTACCCAGCCGACCACAACGACCCGCTCCTACTCAACT GGGTCAAGTACCCGGGCAACCCGGTCCTCTTCCCTCCTCAAGGTATCCACTTCAAGGACTTCCGCGACCCGACGACGGCGTGGCGGACACCAGAAGGGAA GTGGAGGATCACGATCGGGTCGAAGGTCAACAAAACCGGAATCGCTTTGGTTTACGACACCGATGATTTCATCAACTTCGATCTGAAAGATGGGATCCTC CACGGCGTTCCCGGGACCGGAATGTGGGAGTGCGTTGACTTTTATCCGGTGGCGGTTGATGGGGGGAACGGGATGGACACGTCGGCGAACGGTGCTGGGG TTAAGCATGTGATGAAGACGAGTTTGGATGATGATAGGCATGATTACTACGCGATTGGGAGTTACGATGAGGTGAATGCTAAGTGGGTACCCGATAACCC GGAGATTGACGTTGGGATTGGAATTAGGTATGATTACGGCATCTTCTACGCTTCCAAGACGTTTTACGATCAGAGCAAGCAGAGGAGAGTGCTTTGGGGT TGGATTGGTGAGTCTGATAGTGAAGCTGCTGATGTTAGGAAAGGATGGGCTTCCCTGCAGGGGATTCCAAGGACGGTTGTTCTTGATACAAAGACGGGAA GCAATCTATTGCAATGGCCGGTGGAAGAGGCTGAGAAATTGAGATTGAGAAGTCAGGAGTTTAAAAACGTTGTAGCAAAGCCTGGATCAGTTGTGCCTAT TGAAGTTGAATCTGCAACACAGTTAGATGTAGTGGCGGAATTCGAGCTAGACAAAGAAGCGGTAGAGAAGGCAGTCGAGTCGGACGAGGAATACAAGTGT AGCAAAGGTGCAGCTCAACGCGGAGCATTGGGACCGTTTGGACTACTGGTTCTGTCCGAGGACACTCTTAGTGAACAAACCCCTGTGTATTTCTATGTGG TGAAAGGAAAGAATGGAACTTTGAGGACCTCATTCTGCACTGACCAGTCTAGGTCGTCGTTAGCGAACGATGTGAACAAGAAGCTGTACGGGAGCTACGT GCCGGTGCTAGAAGGGGAGAAGTTCAAGGTTAGGATGTTGGTGGATCATTCAATCATAGAGAGTTTTGCACAAGGTGGAAGGTCAGTGATTACTTCAAGA GTTTACCCGACGAAGGCGATATACGGAGCTGCTAGGCTGTTCTTGTTCAATAATGCGACGGGGGCTGGAGTGACTGCCTCTCTTAAGGTTTGGCAGATGA ACTCTGCATTCATCCGGCCATACCCAAACCTGTAG
AA sequence Show only first row Show all	>Lus10004340 pacid=23161745 polypeptide=Lus10004340 locus=Lus10004340.g ID=Lus10004340.BGIv1.0 annot-version=v1.0 MADNKQPFLPVTGAEPSKNHAPSSGSRKKLLLAAFGGIFVVCLILAGGGYDKSGLVKSARFGGGGSDLDEPAGNAIRSAVSRGKSEGVSEKANLPEHHLL RGENAVTEEFPWNNSMLSWQRTAFHFQPEKNWMNGPLFYKGWYHFFYQYNPNAPVWGDIVWGHAVSRDLIHWLHLPLAMVADQWYDVNGVWTGSATILPN GNLVMLYTGSTNESVQVQNLAYPADHNDPLLLNWVKYPGNPVLFPPQGIHFKDFRDPTTAWRTPEGKWRITIGSKVNKTGIALVYDTDDFINFDLKDGIL HGVPGTGMWECVDFYPVAVDGGNGMDTSANGAGVKHVMKTSLDDDRHDYYAIGSYDEVNAKWVPDNPEIDVGIGIRYDYGIFYASKTFYDQSKQRRVLWG WIGESDSEAADVRKGWASLQGIPRTVVLDTKTGSNLLQWPVEEAEKLRLRSQEFKNVVAKPGSVVPIEVESATQLDVVAEFELDKEAVEKAVESDEEYKC SKGAAQRGALGPFGLLVLSEDTLSEQTPVYFYVVKGKNGTLRTSFCTDQSRSSLANDVNKKLYGSYVPVLEGEKFKVRMLVDHSIIESFAQGGRSVITSR VYPTKAIYGAARLFLFNNATGAGVTASLKVWQMNSAFIRPYPNL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G12240		ATBETAFRUCT4, V...	VACUOLAR INVERTASE, Glycosyl h...		Lus10004340 [exp]	0	1
AT3G12050			Aha1 domain-containing protein...		Lus10021072 [exp]	1.7	0.9229
AT1G16810			unknown protein		Lus10026960 [exp]	3.9	0.9002
AT1G30070			SGS domain-containing protein ...		Lus10038500 [exp]	5.7	0.9218
AT5G53400		BOB1, BOBBER1	BOBBER1, HSP20-like chaperones...		Lus10005009 [exp]	8.9	0.8980
AT1G11840		ATGLX1	glyoxalase I homolog (.1.2.3.4...		Lus10002943 [exp]	11.5	0.8650
AT5G02500		AtHsp70-1, AT-H...	HEAT SHOCK PROTEIN 70-1, ARABI...		Lus10005953 [exp]	13.7	0.8899
AT1G07400			HSP20-like chaperones superfam...		Lus10016456 [exp]	14.8	0.8920
AT3G43520			Transmembrane proteins 14C (.1...		Lus10011926 [exp]	15.2	0.8270
AT3G07090			PPPDE putative thiol peptidase...		Lus10038168 [exp]	16.5	0.8723
AT3G16050		A37, ATPDX1.2	ARABIDOPSIS THALIANA PYRIDOXIN...		Lus10037545 [exp]	17.1	0.8917

Compare expression of checked genes

Lus10004340 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.