Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G22580 567 / 0 Exostosin family protein (.1) AT4G13990 287 / 3e-91 Exostosin family protein (.1) AT2G29040 289 / 5e-90 Exostosin family protein (.1) AT2G31990 278 / 2e-88 Exostosin family protein (.1) AT2G32750 279 / 3e-88 Exostosin family protein (.1) AT2G32740 259 / 3e-81 ATGT13 ARABIDOPSIS GALACTOSYLTRANSFERASE 13, galactosyltransferase 13 (.1) AT2G20370 263 / 4e-81 AtMUR3, MUR3, KAM1 MURUS 3, KATAMARI 1, Exostosin family protein (.1) AT5G41250 247 / 1e-75 Exostosin family protein (.1) AT1G63450 249 / 3e-75 RHS8 root hair specific 8 (.1) AT5G62220 239 / 8e-73 ATGT18 glycosyltransferase 18 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028924 [exp] 877 / 0 AT4G22580 575 / 0.0 Exostosin family protein (.1) Lus10006694 [exp] 287 / 8e-91 AT4G13990 617 / 0.0 Exostosin family protein (.1) Lus10010677 [exp] 278 / 4e-88 AT2G32750 497 / 7e-173 Exostosin family protein (.1) Lus10016532 [exp] 278 / 1e-87 AT2G29040 546 / 0.0 Exostosin family protein (.1) Lus10001028 [exp] 275 / 9e-87 AT4G13990 499 / 1e-173 Exostosin family protein (.1) Lus10007426 [exp] 273 / 7e-86 AT2G32750 505 / 5e-176 Exostosin family protein (.1) Lus10004967 [exp] 268 / 4e-83 AT2G29040 573 / 0.0 Exostosin family protein (.1) Lus10001578 [exp] 266 / 1e-82 AT2G29040 566 / 0.0 Exostosin family protein (.1) Lus10024961 [exp] 264 / 1e-81 AT2G20370 959 / 0.0 MURUS 3, KATAMARI 1, Exostosin family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G112200 [exp] 660 / 0 AT4G22580 583 / 0.0 Exostosin family protein (.1) Potri.001G120800 [exp] 647 / 0 AT4G22580 593 / 0.0 Exostosin family protein (.1) Potri.014G147800 [exp] 286 / 7e-91 AT4G13990 534 / 0.0 Exostosin family protein (.1) Potri.009G032500 [exp] 283 / 3e-88 AT2G29040 588 / 0.0 Exostosin family protein (.1) Potri.001G321000 [exp] 270 / 8e-85 AT4G13990 660 / 0.0 Exostosin family protein (.1) Potri.002G256200 [exp] 260 / 4e-80 AT2G20370 964 / 0.0 MURUS 3, KATAMARI 1, Exostosin family protein (.1) Potri.001G105300 [exp] 256 / 1e-78 AT1G63450 653 / 0.0 root hair specific 8 (.1) Potri.015G132600 [exp] 233 / 8e-71 AT5G62220 619 / 0.0 glycosyltransferase 18 (.1) Potri.012G130700 [exp] 226 / 5e-68 AT5G62220 626 / 0.0 glycosyltransferase 18 (.1) Potri.001G382200 [exp] 225 / 7e-68 AT1G68470 530 / 0.0 Exostosin family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03016 [flax] [poplar] Exostosin Exostosin family
Representative CDS sequence Show only first row Show all	>Lus10004341 pacid=23161726 polypeptide=Lus10004341 locus=Lus10004341.g ID=Lus10004341.BGIv1.0 annot-version=v1.0 ATGGCGTCCATACCCATTTCCCTTCTTCCTCTTCTCTTCATCGTCATCCTCCTATCCCTTTCATTCAATCCGGCCATCTCCCAAGAATCATCCAAGTCCA GAAAAGAACGAGCCGGATCATCTTCAGACTCAAAACCCCATTCATCCCCGCCGCTCGACTGCACGAACCGTTGGATCCACATCCGGCGGTTACCAACAAG ATTCAACATTGATCTCCTCGCCAACTGCTCCGTCTACGGCGACCTCTTCTACGACTTCTGCCCTTTCCTTTCCATCCACGGCCTCGGACCCAAAACCCAC AACCGATCCCACTCATGGTACCGAACCGACCCGTTCCTCCTCGAGCTGACCTTCCACCGCCGGATGCTCGAGTACCCGTGTCTGACCCGCGACCCGAATC AGGCCGACGCCGTCTATCTACCCTACTACGCGGCAACCGATTCCCTAAGGTATCTCTACGGTCCCGAGGTTAACAATAGTATGGACCACGGATTGGATCT GTTCGAGTTCTTGCAGGAGAACGAAGGGTGGATCTGGAGGAAGAATTCTGGATCGGATCATTTTCTAGTGATGGCCCGACCCGCCTGGGATTTCTCCCAG CCCCCGGATCTTGATCCGCCGGGTTGGGGGACTTCGTTCTTAGAACTTCCTGAGTTCTACAATCTGACGGCGTTGGTGGTTGAGTCGAGGTTGTGGGCTG GGCAGGAACAGGCGATTCCTTATCTGACGTCGTTTCATCCCCCCAATTTGGAGCTTTTGGATTCCTGGATTAATCGGGTTAAGGCTTCCAGGAGGACTAC GTTGATGCTGTTCGCCGGCGGCGGAGGGGTGTCGGCTCAGGCCAATATACGGAGGAGCATTAGGGATGAGTGTGAGAATAGTAGTAGCGAGGCGTTCGAG AGCAATGGCGGGTGGTACTATTACTCGAAAGTATGCGACATTGTTGATTGCTCGAATGGGAAATGCGGGCATGATCCGATCTTGTACATGAGGCCGATGT TGCAGTCCACGTTCTGCTTGCAGCCTCCAGGGGATACGCCAACGAGAAGGTCGACGTTTGATGCGATAATCGCGGGATGCATACCGGTGTTCTTTGAGGA TCAATCGGCGAGAATGCAGTACGGGTGGCACTTGCCAGAGGACGAGTATGGGGAGTTTGCAGTGCATATTCAGAAGGAGGATGTGGTGAATAAAGGGTTG AAGATTTTGGATGTGTTGATGGGGATTCCTAGGGCTAGAGTTAGGAGGATGAGGCAGAAAGTTGTTGAGTTGATCCCAAAGGTTGTTTACAGGAAGCATG GGAGTTCAGCTGAGCTGAGAGCTCACAAGGATGCTTTTGATATTGCAATTGATGGAGCTCTGGAGAGGATTAGGTCTAGGGTCAAACGTGAAGACTTTTC TGGTTTGATCATGAAATAA
AA sequence Show only first row Show all	>Lus10004341 pacid=23161726 polypeptide=Lus10004341 locus=Lus10004341.g ID=Lus10004341.BGIv1.0 annot-version=v1.0 MASIPISLLPLLFIVILLSLSFNPAISQESSKSRKERAGSSSDSKPHSSPPLDCTNRWIHIRRLPTRFNIDLLANCSVYGDLFYDFCPFLSIHGLGPKTH NRSHSWYRTDPFLLELTFHRRMLEYPCLTRDPNQADAVYLPYYAATDSLRYLYGPEVNNSMDHGLDLFEFLQENEGWIWRKNSGSDHFLVMARPAWDFSQ PPDLDPPGWGTSFLELPEFYNLTALVVESRLWAGQEQAIPYLTSFHPPNLELLDSWINRVKASRRTTLMLFAGGGGVSAQANIRRSIRDECENSSSEAFE SNGGWYYYSKVCDIVDCSNGKCGHDPILYMRPMLQSTFCLQPPGDTPTRRSTFDAIIAGCIPVFFEDQSARMQYGWHLPEDEYGEFAVHIQKEDVVNKGL KILDVLMGIPRARVRRMRQKVVELIPKVVYRKHGSSAELRAHKDAFDIAIDGALERIRSRVKREDFSGLIMK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G22580			Exostosin family protein (.1)		Lus10004341 [exp]	0	1
AT5G39570			unknown protein		Lus10016220 [exp]	1.4	0.9625
AT1G74310		HOT1, ATHSP101	heat shock protein 101 (.1)		Lus10021160 [exp]	2.0	0.9688
AT1G74310		HOT1, ATHSP101	heat shock protein 101 (.1)		Lus10040528 [exp]	4.5	0.9604
AT1G74310		HOT1, ATHSP101	heat shock protein 101 (.1)		Lus10021159 [exp]	4.5	0.9600
AT1G74310		HOT1, ATHSP101	heat shock protein 101 (.1)		Lus10040527 [exp]	4.6	0.9622
AT1G62740		Hop2	Hop2, stress-inducible protein...		Lus10028919 [exp]	6.5	0.9472
AT5G57460			unknown protein		Lus10000167 [exp]	7.1	0.9266
AT4G25200		ATHSP23.6-MITO	mitochondrion-localized small ...		Lus10031154 [exp]	8.5	0.9282
AT3G55530		SDIR1	SALT- AND DROUGHT-INDUCED RING...		Lus10001568 [exp]	9.0	0.9274
AT5G02500		AtHsp70-1, AT-H...	HEAT SHOCK PROTEIN 70-1, ARABI...		Lus10023418 [exp]	10.9	0.9415

Compare expression of checked genes

Lus10004341 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.