Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G45550 176 / 5e-53 CYP76C4 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) AT3G26300 172 / 1e-51 CYP71B34 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) AT3G26330 171 / 4e-51 CYP71B37 "cytochrome P450, family 71, subfamily B, polypeptide 37", cytochrome P450, family 71, subfamily B, polypeptide 37 (.1) AT5G25180 170 / 8e-51 CYP71B14 "cytochrome P450, family 71, subfamily B, polypeptide 14", cytochrome P450, family 71, subfamily B, polypeptide 14 (.1) AT3G26290 169 / 2e-50 CYP71B26 "cytochrome P450, family 71, subfamily B, polypeptide 26", cytochrome P450, family 71, subfamily B, polypeptide 26 (.1) AT5G25140 169 / 2e-50 CYP71B13 "cytochrome P450, family 71, subfamily B, polypeptide 13", cytochrome P450, family 71, subfamily B, polypeptide 13 (.1) AT5G25130 167 / 1e-49 CYP71B12 "cytochrome P450, family 71, subfamily B, polypeptide 12", cytochrome P450, family 71, subfamily B, polypeptide 12 (.1) AT3G61040 167 / 2e-49 CYP76C7 "cytochrome P450, family 76, subfamily C, polypeptide 7", cytochrome P450, family 76, subfamily C, polypeptide 7 (.1.2) AT3G26320 167 / 2e-49 CYP71B36 "cytochrome P450, family 71, subfamily B, polypeptide 36", cytochrome P450, family 71, subfamily B, polypeptide 36 (.1) AT2G45580 167 / 2e-49 CYP76C3 "cytochrome P450, family 76, subfamily C, polypeptide 3", cytochrome P450, family 76, subfamily C, polypeptide 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028926 [exp] 327 / 1e-110 AT3G26330 382 / 3e-127 "cytochrome P450, family 71, subfamily B, polypeptide 37", cytochrome P450, family 71, subfamily B, polypeptide 37 (.1) Lus10042815 [exp] 231 / 7e-74 AT1G13110 396 / 3e-133 "cytochrome P450, family 71 subfamily B, polypeptide 7", cytochrome P450, family 71 subfamily B, polypeptide 7 (.1) Lus10041667 [exp] 221 / 8e-70 AT3G26300 375 / 3e-125 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Lus10030924 [exp] 218 / 7e-69 AT3G26300 391 / 2e-131 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Lus10016601 [exp] 215 / 9e-68 AT3G26320 402 / 6e-136 "cytochrome P450, family 71, subfamily B, polypeptide 36", cytochrome P450, family 71, subfamily B, polypeptide 36 (.1) Lus10030708 [exp] 211 / 2e-66 AT3G26210 390 / 6e-131 "cytochrome P450, family 71, subfamily B, polypeptide 23", cytochrome P450, family 71, subfamily B, polypeptide 23 (.1) Lus10042419 [exp] 207 / 2e-65 AT3G48280 343 / 3e-114 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1) Lus10016599 [exp] 207 / 1e-64 AT3G26330 395 / 7e-133 "cytochrome P450, family 71, subfamily B, polypeptide 37", cytochrome P450, family 71, subfamily B, polypeptide 37 (.1) Lus10002661 [exp] 205 / 2e-64 AT3G26300 323 / 2e-105 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G223500 [exp] 216 / 5e-68 AT3G26300 395 / 3e-133 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.007G074900 [exp] 209 / 2e-65 AT3G26300 383 / 3e-128 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.007G075000 [exp] 208 / 3e-65 AT3G26300 386 / 2e-129 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.007G074300 [exp] 204 / 1e-63 AT3G26300 343 / 6e-113 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.011G131001 [exp] 197 / 3e-63 AT3G26230 230 / 4e-72 "cytochrome P450, family 71, subfamily B, polypeptide 24", cytochrome P450, family 71, subfamily B, polypeptide 24 (.1) Potri.007G074850 [exp] 202 / 6e-63 AT3G26300 379 / 1e-126 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.001G364900 [exp] 196 / 2e-62 AT3G26300 228 / 1e-70 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.001G365366 [exp] 194 / 3e-62 AT3G26230 228 / 3e-71 "cytochrome P450, family 71, subfamily B, polypeptide 24", cytochrome P450, family 71, subfamily B, polypeptide 24 (.1) Potri.011G130850 [exp] 198 / 2e-61 AT3G26300 361 / 5e-120 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.011G130800 [exp] 197 / 3e-61 AT3G26300 359 / 4e-119 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10004343 pacid=23161749 polypeptide=Lus10004343 locus=Lus10004343.g ID=Lus10004343.BGIv1.0 annot-version=v1.0 ATGGCTGAAATGATGAAAGACAACAGAGTACTGCAGAAGGCACAAGAAGAAGTTAGACGAGTGTACTCTGGGAAAGCCACTGTGGATGAAGCAAGCATCC ATGAATCGAAATACTTAGACTTGGTAATTAAAGAAAGCTTAAGGCTACACCCGCCGCTGCCTTTGCTCCTCCCTAGAGAGAGCCGCGAGACGGTCGAAAT CGAAGGGTATGTGATCCCAGCCAACACCAAAGTCATCATCGACGGGTGGGCGATTGGGAGAGATGGTCGTTACTGGGACGAGCCTGACAAATTCTACCCC GAAAGGTTTCTGGACCGTTCGATTGACGACAAGGGTATGGATTTCGAGCTTATTCCTTTTGGGTCGGGAAGAAGGATGTGCCCTGGAATGCTCTACGCAT CCGCTGTTGTCAAGCTTGTGCTTGCTGACTTGCTTTATCATTTTGATTGGAAGCTCCCCGGTGGGATGAAGGCTGAAGATTTGGACGTGACGGAGGCATT CGGGGTTACGGTTCGACGAAAATGTGGGTTGTGGTTGATACCAGTGAAGAGCAATGTCGTGAAATCTTGA
AA sequence Show only first row Show all	>Lus10004343 pacid=23161749 polypeptide=Lus10004343 locus=Lus10004343.g ID=Lus10004343.BGIv1.0 annot-version=v1.0 MAEMMKDNRVLQKAQEEVRRVYSGKATVDEASIHESKYLDLVIKESLRLHPPLPLLLPRESRETVEIEGYVIPANTKVIIDGWAIGRDGRYWDEPDKFYP ERFLDRSIDDKGMDFELIPFGSGRRMCPGMLYASAVVKLVLADLLYHFDWKLPGGMKAEDLDVTEAFGVTVRRKCGLWLIPVKSNVVKS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G45550		CYP76C4	"cytochrome P450, family 76, s...		Lus10004343 [exp]	0	1
AT2G24050		eIFiso4G2	eukaryotic translation Initiat...		Lus10036256 [exp]	9.5	0.7183
AT3G15030	TCP	TCP4, MEE35	maternal effect embryo arrest ...		Lus10000463 [exp]	14.9	0.7094
AT5G53210	bHLH	SPCH, bHLH098	SPEECHLESS, basic helix-loop-h...		Lus10001066 [exp]	21.2	0.6816
AT1G53230	TCP	TCP3	TEOSINTE BRANCHED 1, cycloidea...		Lus10002195 [exp]	24.8	0.6821
AT5G35400			Pseudouridine synthase family ...		Lus10022949 [exp]	28.1	0.6837
AT5G66550			Maf-like protein (.1)		Lus10036572 [exp]	36.6	0.6569
AT1G07230		NPC1	non-specific phospholipase C1 ...		Lus10018228 [exp]	38.0	0.6213
					Lus10029487 [exp]	38.7	0.6142
AT2G15220			Plant basic secretory protein ...		Lus10001607 [exp]	58.6	0.6051
AT5G64330		JK218, RPT3, NP...	ROOT PHOTOTROPISM 3, NON-PHOTO...		Lus10015190 [exp]	62.0	0.6319

Compare expression of checked genes

Lus10004343 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.