Plant FIBer expression Database

Lus10004345 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G22550 100 / 3e-26 Phosphatidic acid phosphatase (PAP2) family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.003G111700
[exp]
112 / 1e-30 AT4G22550 95 / 9e-24 Phosphatidic acid phosphatase (PAP2) family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0525 pap2 PF01569 PAP2 PAP2 superfamily
Representative CDS sequence
>Lus10004345 pacid=23161735 polypeptide=Lus10004345 locus=Lus10004345.g ID=Lus10004345.BGIv1.0 annot-version=v1.0
ATGGCGGCAGGGCCACCGCTCCTCCGTCACGTCATCGCCGTAGACGCCGCGATCTCTCTCTTCCTCCACAAACTCTTCCACCCTCTCCTCCCGACGGCGC
TCCTCCTCATCCTCGAGATCTCCGCCGACTTCCGATTCTCCTTCCCTGTCTCCCTCGCCCTTCTCCTCTCCCCTCTTTCCCCGCCGCTCCTCCCTCTCTT
CTGCCCTCTCCTCCTCGGCCTCCTCCTCGATCTCGCCGTCGTCGGACTCACCAAATCAATCTTCCGCCGTGCCCGCCCGTCCTACAACCATTCCTCTATG
TCAGCCGTAGTCGCAATCGACCACTACTCCTTCCCCAGCGGACATTCAACAAGAGTCTTCCTCGTCGCCTCGTTGATCTCTCTCTCAGCTGCTGCGATCC
AGGCCGCTCTGATCGAGCTGAAGTCTGGCGGAGGATTAGTCGAGCGGTGGATCGTCGGGGAGAGAGTGGTGGAGAATGTGGTGATTGGTGTTTTTGCTTG
GGCGGCGATCACAGCGTCGTCCAGGGTTGCTCTCGGGCGGCATTTTTTCTTTGATGTTGTGGCTGGGTCGTGCTTGGGAGTTGTTGAAGGTTACATTGCT
TTTCGATTCTTGCGGTTTGAGGATTTCATGAGGTAA
AA sequence
>Lus10004345 pacid=23161735 polypeptide=Lus10004345 locus=Lus10004345.g ID=Lus10004345.BGIv1.0 annot-version=v1.0
MAAGPPLLRHVIAVDAAISLFLHKLFHPLLPTALLLILEISADFRFSFPVSLALLLSPLSPPLLPLFCPLLLGLLLDLAVVGLTKSIFRRARPSYNHSSM
SAVVAIDHYSFPSGHSTRVFLVASLISLSAAAIQAALIELKSGGGLVERWIVGERVVENVVIGVFAWAAITASSRVALGRHFFFDVVAGSCLGVVEGYIA
FRFLRFEDFMR

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT4G22550 Phosphatidic acid phosphatase ... Lus10004345
[exp]
0 1
AT1G65270 unknown protein Lus10026847
[exp]
1.4 0.8958
AT5G65270 AtRABA4a RAB GTPase homolog A4A (.1) Lus10000637
[exp]
7.1 0.8789
AT2G27260 Late embryogenesis abundant (L... Lus10034173
[exp]
8.0 0.8931
AT2G45060 Uncharacterised conserved prot... Lus10042878
[exp]
9.5 0.8733
AT4G34700 CIB22, AtCIB22 B22 subunit of eukaryotic mito... Lus10042049
[exp]
9.5 0.8777
AT3G11320 Nucleotide-sugar transporter f... Lus10028255
[exp]
9.9 0.8718
AT4G36960 RNA-binding (RRM/RBD/RNP motif... Lus10019341
[exp]
11.8 0.8480
AT3G04090 SIP1A, SIP1;1 small and basic intrinsic prot... Lus10030046
[exp]
15.7 0.8753
AT5G06660 Protein of unknown function DU... Lus10029308
[exp]
17.7 0.8901
AT3G04090 SIP1A, SIP1;1 small and basic intrinsic prot... Lus10035281
[exp]
17.8 0.8181

Lus10004345 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.