Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G62500 114 / 1e-30 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) AT2G10940 92 / 5e-22 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1.2) AT3G22142 82 / 5e-18 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) AT3G22120 77 / 1e-16 CWLP cell wall-plasma membrane linker protein (.1) AT4G15160 75 / 1e-16 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1.2) AT1G12100 64 / 4e-13 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) AT4G12470 62 / 5e-12 AZI1 azelaic acid induced 1 (.1) AT4G12510 61 / 5e-12 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) AT4G12520 61 / 5e-12 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) AT1G12090 60 / 2e-11 ELP extensin-like protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028930 [exp] 134 / 8e-39 AT1G62500 141 / 4e-41 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) Lus10032262 [exp] 121 / 2e-33 AT1G62500 162 / 3e-48 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) Lus10010482 [exp] 82 / 2e-20 AT3G22142 162 / 5e-48 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) Lus10003801 [exp] 84 / 3e-19 AT3G22142 168 / 7e-47 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) Lus10027704 [exp] 82 / 3e-19 AT2G10940 135 / 2e-39 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1.2) Lus10001493 [exp] 69 / 8e-15 AT1G62510 111 / 2e-32 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) Lus10032259 [exp] 68 / 2e-14 AT4G12520 133 / 2e-41 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) Lus10004346 [exp] 66 / 9e-14 AT4G12520 161 / 2e-52 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) Lus10024625 [exp] 65 / 2e-13 AT4G12520 158 / 5e-51 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G111300 [exp] 121 / 1e-33 AT1G62500 125 / 2e-34 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) Potri.006G065500 [exp] 98 / 4e-25 AT2G10940 147 / 8e-44 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1.2) Potri.018G126000 [exp] 98 / 6e-24 AT2G10940 109 / 2e-27 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1.2) Potri.006G008500 [exp] 84 / 5e-20 AT3G22120 80 / 6e-18 cell wall-plasma membrane linker protein (.1) Potri.016G015500 [exp] 87 / 9e-20 AT3G22142 161 / 1e-42 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) Potri.006G008300 [exp] 82 / 8e-19 AT3G22142 113 / 2e-28 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) Potri.018G025900 [exp] 66 / 6e-14 AT2G45180 127 / 8e-39 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) Potri.001G121900 [exp] 67 / 8e-14 AT1G62510 99 / 5e-27 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) Potri.001G121800 [exp] 66 / 1e-13 AT1G12100 143 / 5e-45 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) Potri.003G111400 [exp] 65 / 3e-13 AT1G62510 93 / 7e-25 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10004349 pacid=23161718 polypeptide=Lus10004349 locus=Lus10004349.g ID=Lus10004349.BGIv1.0 annot-version=v1.0 ATGGCTTCTTCTTCAAAACTAATAGCCTTGATATTCATCTCCATGCATTTCATTCTAATCTCCTTGCCTCCTATTTACTCTTGTGTCCCTTGCACTCACC CAAAACCAAAACCAAACCCAAACCCACCCTCTCACTCTCACTCTCCTCCATCATCCGGCCACCGTCCACATCCCCCCACCACCAGCCCACCCCACCACGG CGGGGGCCGCGGTGGTCACCATGGTAAAGGCAAAGGCAAAGGCAAAGGAGGTGGCGGAGGTAAAGGGCATAATCGTCCTCCACCAATAGTTTCACCACCC ATCATAGTCAACCCTCCTCCGGTTACATACCCTCCTCCGGTGGTGACGCCTCCCGTGATAAACCCTCCACCTCCTTCTTCCGTGCCATGTCCTCCTCCGC CAGCTACGCAACCCACGTGTCCGATCGGAGGGCTGAAGCTAGGAGCGTGCGTGGACGTGCTGGGAGGGTTGGTCCACGTAGGGGTAGGGAACCCGGTGGA GAATGTGTGCTGTCCGGTGATTAAAGGGCTGCTGGAGATTGAAGCCGCCGTTTGTTTGTGCACGTCCATAAGGCTGAAGCTTCTTAACATCAACATCTTC ATCCCTTTAGCACTTCAGGCTCTCATCACCTGCGGCAAGACTTCCCCCCCTGGCTTCGTTTGCCCTCCACTTTGA
AA sequence Show only first row Show all	>Lus10004349 pacid=23161718 polypeptide=Lus10004349 locus=Lus10004349.g ID=Lus10004349.BGIv1.0 annot-version=v1.0 MASSSKLIALIFISMHFILISLPPIYSCVPCTHPKPKPNPNPPSHSHSPPSSGHRPHPPTTSPPHHGGGRGGHHGKGKGKGKGGGGGKGHNRPPPIVSPP IIVNPPPVTYPPPVVTPPVINPPPPSSVPCPPPPATQPTCPIGGLKLGACVDVLGGLVHVGVGNPVENVCCPVIKGLLEIEAAVCLCTSIRLKLLNINIF IPLALQALITCGKTSPPGFVCPPL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G62500			Bifunctional inhibitor/lipid-t...		Lus10004349 [exp]	0	1
AT1G62500			Bifunctional inhibitor/lipid-t...		Lus10028930 [exp]	3.9	0.8813
AT2G40435			unknown protein		Lus10009089 [exp]	7.1	0.8512
AT2G40550		ETG1	E2F target gene 1 (.1)		Lus10030540 [exp]	8.8	0.8942
AT4G31810			ATP-dependent caseinolytic (Cl...		Lus10010685 [exp]	22.6	0.8910
AT5G42960			unknown protein		Lus10007162 [exp]	23.5	0.8900
AT4G11610		NTRB, ATNTRB	C2 calcium/lipid-binding plant...		Lus10031816 [exp]	25.9	0.8792
AT5G39550		ORTH1, VIM3	VARIANT IN METHYLATION 3, ORTH...		Lus10039127 [exp]	30.3	0.8805
AT1G80670		RAE1	RNA export factor 1, Transduci...		Lus10002323 [exp]	33.6	0.8857
AT3G05510			Phospholipid/glycerol acyltran...		Lus10020650 [exp]	42.4	0.8577
AT5G40200		DEGP9	DegP protease 9 (.1)		Lus10014524 [exp]	43.8	0.8700

Compare expression of checked genes

Lus10004349 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.