Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G17260 536 / 0 Lactate/malate dehydrogenase family protein (.1) AT2G22780 74 / 1e-14 PMDH1 peroxisomal NAD-malate dehydrogenase 1 (.1) AT1G53240 73 / 2e-14 mMDH1 mitochondrial malate dehydrogenase 1, Lactate/malate dehydrogenase family protein (.1) AT3G15020 71 / 1e-13 mMDH2 mitochondrial malate dehydrogenase 2, Lactate/malate dehydrogenase family protein (.1.2) AT5G09660 65 / 1e-11 PMDH2 peroxisomal NAD-malate dehydrogenase 2 (.1.2.3.4) AT3G47520 59 / 2e-09 pNAD-MDH, MDH plastidic NAD-dependent malate dehydrogenase, malate dehydrogenase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002982 [exp] 237 / 9e-79 AT4G17260 198 / 6e-64 Lactate/malate dehydrogenase family protein (.1) Lus10002983 [exp] 216 / 3e-70 AT4G17260 159 / 3e-48 Lactate/malate dehydrogenase family protein (.1) Lus10028931 [exp] 132 / 9e-38 AT4G17260 88 / 1e-21 Lactate/malate dehydrogenase family protein (.1) Lus10039642 [exp] 79 / 4e-16 AT2G22780 617 / 0.0 peroxisomal NAD-malate dehydrogenase 1 (.1) Lus10011587 [exp] 77 / 3e-15 AT2G22780 547 / 0.0 peroxisomal NAD-malate dehydrogenase 1 (.1) Lus10038323 [exp] 68 / 1e-12 AT3G15020 578 / 0.0 mitochondrial malate dehydrogenase 2, Lactate/malate dehydrogenase family protein (.1.2) Lus10019096 [exp] 68 / 3e-12 AT3G47520 575 / 0.0 plastidic NAD-dependent malate dehydrogenase, malate dehydrogenase (.1) Lus10021666 [exp] 67 / 4e-12 AT3G47520 542 / 0.0 plastidic NAD-dependent malate dehydrogenase, malate dehydrogenase (.1) Lus10034458 [exp] 67 / 4e-12 AT3G47520 572 / 0.0 plastidic NAD-dependent malate dehydrogenase, malate dehydrogenase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G122400 [exp] 565 / 0 AT4G17260 545 / 0.0 Lactate/malate dehydrogenase family protein (.1) Potri.003G111201 [exp] 478 / 2e-171 AT4G17260 477 / 3e-171 Lactate/malate dehydrogenase family protein (.1) Potri.008G135920 [exp] 382 / 5e-134 AT4G17260 372 / 1e-130 Lactate/malate dehydrogenase family protein (.1) Potri.009G081600 [exp] 81 / 1e-16 AT2G22780 602 / 0.0 peroxisomal NAD-malate dehydrogenase 1 (.1) Potri.007G009100 [exp] 78 / 7e-16 AT2G22780 612 / 0.0 peroxisomal NAD-malate dehydrogenase 1 (.1) Potri.004G054200 [exp] 72 / 6e-14 AT1G53240 520 / 0.0 mitochondrial malate dehydrogenase 1, Lactate/malate dehydrogenase family protein (.1) Potri.001G287400 [exp] 72 / 8e-14 AT2G22780 588 / 0.0 peroxisomal NAD-malate dehydrogenase 1 (.1) Potri.017G102000 [exp] 67 / 5e-12 AT3G47520 591 / 0.0 plastidic NAD-dependent malate dehydrogenase, malate dehydrogenase (.1) Potri.001G376500 [exp] 66 / 9e-12 AT3G15020 523 / 0.0 mitochondrial malate dehydrogenase 2, Lactate/malate dehydrogenase family protein (.1.2) Potri.011G096300 [exp] 66 / 1e-11 AT3G15020 541 / 0.0 mitochondrial malate dehydrogenase 2, Lactate/malate dehydrogenase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0341 [flax] [poplar] LDH_C PF02866 [flax] [poplar] Ldh_1_C lactate/malate dehydrogenase, alpha/beta C-terminal domain CL0063 [flax] [poplar] NADP_Rossmann PF00056 [flax] [poplar] Ldh_1_N lactate/malate dehydrogenase, NAD binding domain
Representative CDS sequence Show only first row Show all	>Lus10004350 pacid=23161748 polypeptide=Lus10004350 locus=Lus10004350.g ID=Lus10004350.BGIv1.0 annot-version=v1.0 ATGCACAAAACGCCTTCAGGTTCATCGCTGGGCGGCCCCGACGGCCTAGACCTAACCCAAACATTCTTCAAACCCATCCAGAGGACCGACTCCCTCTACT CATCCAAGCGCTCCATCACCAAGATCTCCGTCATCGGCGTCGGCAACGTCGGCATGGCCATCGCCCAGACCATCCTCACCCAGGACCTCGCCGACGAGAT CGCCCTCGTCGACGCCAACCACGACAAGCTCCGCGGCGAGATGCTCGACCTCCAGCACGCCGCCGCCTTCCTCCCCCGCACCAAGATCCTCGCCTCCACC GACTCCTCCGTCACCGCCGGATCAGACCTCTGCATCGTCACCGCCGGCGCCCGCCAGAACCCCGGCGAGTCCCGGCTCAATCTCCTCCAGAGGAACGTCG CCATCTTCAAGTCGATCATCCCTTCCTTAGCCAAACACTCCCCCCACGCCATTCTGTTGATCGTCTCCAATCCAGTCGATGTTCTCACCTACGTTGCCTG GAAGCTATCCGGGTTCCCCTCCAACCGGGTCATCGGATCGGGTACCAATCTGGATAGCTCTCGATTCAGGTTCTTGATCGCTGATCATCTCGACGTCAAC GCCCAGGACGTCCAGGCGTACATAGTGGGGGAGCACGGTGACAGCTCGGTGGCGCTGTGGTCGAGCATAAGCGTGGGGGGAGTGCCGATAATGAGCTTCT TGGAGCAGCAGCAGATACCATTGGAGAAGGATACGCTGGAGAATATCCACAAAGAGGTGGTGCATAGCGCCTACGAAGTTATAAACTTGAAAGGGTATAC TTCGTGGGCTATCGGGTATTCGGCTGCGAATTTGGCCAGGTCGATACTGAGGAACCAGAGGAGGATCCACCCTGTGACAGTTCTGGCTAAAGGGTTCTAC GGGATTGAAGGTGGGGAGGTGTTCTTGAGCCTGCCGGCTCTTCTGGGGAGAGGTGGGGCTTTGTCTGTGACTAATGTGCATATGACTGATGAGGAAGCTC AGCGGCTTAGGGAATCGGCTATGACCATACTTGAGGTGCAGAGCCAGTTGAAGATTTGA
AA sequence Show only first row Show all	>Lus10004350 pacid=23161748 polypeptide=Lus10004350 locus=Lus10004350.g ID=Lus10004350.BGIv1.0 annot-version=v1.0 MHKTPSGSSLGGPDGLDLTQTFFKPIQRTDSLYSSKRSITKISVIGVGNVGMAIAQTILTQDLADEIALVDANHDKLRGEMLDLQHAAAFLPRTKILAST DSSVTAGSDLCIVTAGARQNPGESRLNLLQRNVAIFKSIIPSLAKHSPHAILLIVSNPVDVLTYVAWKLSGFPSNRVIGSGTNLDSSRFRFLIADHLDVN AQDVQAYIVGEHGDSSVALWSSISVGGVPIMSFLEQQQIPLEKDTLENIHKEVVHSAYEVINLKGYTSWAIGYSAANLARSILRNQRRIHPVTVLAKGFY GIEGGEVFLSLPALLGRGGALSVTNVHMTDEEAQRLRESAMTILEVQSQLKI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G17260			Lactate/malate dehydrogenase f...		Lus10004350 [exp]	0	1
AT4G32060			calcium-binding EF hand family...		Lus10005346 [exp]	2.0	0.9517
AT4G10265			Wound-responsive family protei...		Lus10018532 [exp]	2.8	0.9524
AT5G08570			Pyruvate kinase family protein...		Lus10013450 [exp]	4.5	0.9483
AT2G30970		ASP1	aspartate aminotransferase 1 (...		Lus10025252 [exp]	5.8	0.9215
AT3G10040	Trihelix		sequence-specific DNA binding ...		Lus10008643 [exp]	8.5	0.9438
AT5G08570			Pyruvate kinase family protein...		Lus10013449 [exp]	9.9	0.9430
AT5G05840			Protein of unknown function (D...		Lus10040241 [exp]	11.1	0.8626
AT2G47430		CKI1	CYTOKININ-INDEPENDENT 1, Signa...		Lus10029849 [exp]	13.8	0.9455
AT1G77120		ADH1, ATADH, AT...	ARABIDOPSIS THALIANA ALCOHOL D...		Lus10029759 [exp]	14.5	0.9496
AT5G39890			Protein of unknown function (D...		Lus10013620 [exp]	15.9	0.9283

Compare expression of checked genes

Lus10004350 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.