Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G45170 179 / 4e-59 ATATG8E AUTOPHAGY 8E (.1.2) AT4G16520 177 / 2e-58 ATG8F autophagy 8f, Ubiquitin-like superfamily protein (.1.2) AT1G62040 174 / 4e-57 ATG8C autophagy 8c, Ubiquitin-like superfamily protein (.1.2) AT3G60640 171 / 5e-56 ATG8G AUTOPHAGY 8G, Ubiquitin-like superfamily protein (.1) AT2G05630 169 / 3e-55 ATG8D Ubiquitin-like superfamily protein (.1.2) AT4G21980 167 / 3e-54 ATG8A, APG8A AUTOPHAGY-RELATED 8A, AUTOPHAGY 8A, Ubiquitin-like superfamily protein (.1.2) AT4G04620 163 / 4e-53 ATG8B autophagy 8b, Ubiquitin-like superfamily protein (.1.2) AT3G15580 121 / 2e-36 APG8H, ATG8I AUTOPHAGY 8I, AUTOPHAGY 8H, Ubiquitin-like superfamily protein (.1) AT3G06420 116 / 2e-34 ATG8H autophagy 8h, Ubiquitin-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028933 [exp] 197 / 4e-66 AT4G16520 215 / 6e-74 autophagy 8f, Ubiquitin-like superfamily protein (.1.2) Lus10008507 [exp] 185 / 1e-61 AT4G16520 216 / 3e-74 autophagy 8f, Ubiquitin-like superfamily protein (.1.2) Lus10000733 [exp] 183 / 7e-61 AT4G16520 217 / 1e-74 autophagy 8f, Ubiquitin-like superfamily protein (.1.2) Lus10015563 [exp] 172 / 3e-56 AT1G62040 230 / 1e-79 autophagy 8c, Ubiquitin-like superfamily protein (.1.2) Lus10027186 [exp] 168 / 6e-55 AT2G05630 222 / 1e-76 Ubiquitin-like superfamily protein (.1.2) Lus10039656 [exp] 164 / 2e-52 AT2G05630 203 / 6e-68 Ubiquitin-like superfamily protein (.1.2) Lus10038046 [exp] 120 / 9e-36 AT3G15580 199 / 1e-67 AUTOPHAGY 8I, AUTOPHAGY 8H, Ubiquitin-like superfamily protein (.1) Lus10009987 [exp] 112 / 2e-29 AT3G62240 625 / 0.0 RING/U-box superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G136040 [exp] 187 / 2e-62 AT4G16520 197 / 1e-66 autophagy 8f, Ubiquitin-like superfamily protein (.1.2) Potri.003G110901 [exp] 187 / 2e-62 AT4G16520 197 / 1e-66 autophagy 8f, Ubiquitin-like superfamily protein (.1.2) Potri.001G122700 [exp] 186 / 4e-62 AT4G16520 191 / 2e-64 autophagy 8f, Ubiquitin-like superfamily protein (.1.2) Potri.002G144600 [exp] 181 / 4e-60 AT3G60640 192 / 8e-65 AUTOPHAGY 8G, Ubiquitin-like superfamily protein (.1) Potri.014G060300 [exp] 180 / 1e-59 AT4G16520 214 / 1e-73 autophagy 8f, Ubiquitin-like superfamily protein (.1.2) Potri.002G228800 [exp] 171 / 6e-56 AT2G05630 224 / 1e-77 Ubiquitin-like superfamily protein (.1.2) Potri.014G153800 [exp] 169 / 2e-55 AT2G05630 202 / 6e-69 Ubiquitin-like superfamily protein (.1.2) Potri.004G013700 [exp] 164 / 2e-53 AT1G62040 216 / 3e-74 autophagy 8c, Ubiquitin-like superfamily protein (.1.2) Potri.011G004300 [exp] 162 / 4e-52 AT4G21980 219 / 1e-74 AUTOPHAGY-RELATED 8A, AUTOPHAGY 8A, Ubiquitin-like superfamily protein (.1.2) Potri.008G099400 [exp] 121 / 2e-36 AT3G15580 187 / 7e-63 AUTOPHAGY 8I, AUTOPHAGY 8H, Ubiquitin-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0072 [flax] [poplar] Ubiquitin PF02991 [flax] [poplar] Atg8 Autophagy protein Atg8 ubiquitin like
Representative CDS sequence Show only first row Show all	>Lus10004352 pacid=23161741 polypeptide=Lus10004352 locus=Lus10004352.g ID=Lus10004352.BGIv1.0 annot-version=v1.0 ATGCTCCCCTCTTCGAATTATAGTAGGGGTGACTCTAATAAAACTGAATCACTAGTCAGCTGGATGATTCAGCAGCTTGAGCACCAAGATAGAGAGAAGA GAAAGGCTGAGGCTGCCAGGATAAGGGAGAAGTACCCAGATAGAATTCCGGTCATTGTGGAGAAGGCGGAGAGAAGTGAAATACCAAACATAGACAAGAA AAAGTACCTAGTCCCATCTGACTTGACTGTCGGACAGTTTGTTTACGTAATCCGAAAGAGGATCAAATTGAGTGCTGAAAAGGCAATCTTCATATTCGTG GACAATGTCCTGCCACCAACCGGTGCTATAATGTCTGCAATATATGAAGAAAAGAAGGATGAAGACGGATTTCTCTATGTTACTTACAGCGGCGAGAATA CTTTCGGAGTGGAGATTCATCAGTAG
AA sequence Show only first row Show all	>Lus10004352 pacid=23161741 polypeptide=Lus10004352 locus=Lus10004352.g ID=Lus10004352.BGIv1.0 annot-version=v1.0 MLPSSNYSRGDSNKTESLVSWMIQQLEHQDREKRKAEAARIREKYPDRIPVIVEKAERSEIPNIDKKKYLVPSDLTVGQFVYVIRKRIKLSAEKAIFIFV DNVLPPTGAIMSAIYEEKKDEDGFLYVTYSGENTFGVEIHQ

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G45170		ATATG8E	AUTOPHAGY 8E (.1.2)		Lus10004352 [exp]	0	1
AT3G27010	TCP	ATTCP20, PCF1, ...	ARABIDOPSIS THALIANA TEOSINTE ...		Lus10035193 [exp]	2.8	0.9042
AT1G71340		AtGDPD4	glycerophosphodiester phosphod...		Lus10013777 [exp]	4.0	0.8833
AT3G56460			GroES-like zinc-binding alcoho...		Lus10028988 [exp]	4.2	0.8924
AT2G42780			unknown protein		Lus10031380 [exp]	6.0	0.8910
AT3G27010	TCP	ATTCP20, PCF1, ...	ARABIDOPSIS THALIANA TEOSINTE ...		Lus10032022 [exp]	6.0	0.8763
AT5G09850			Transcription elongation facto...		Lus10003853 [exp]	6.5	0.9091
AT2G24550			unknown protein		Lus10020142 [exp]	8.7	0.9100
AT5G26990			Drought-responsive family prot...		Lus10015214 [exp]	8.7	0.8719
AT5G39360		EDL2	EID1-like 2 (.1)		Lus10018196 [exp]	10.2	0.8756
AT1G15740			Leucine-rich repeat family pro...		Lus10038107 [exp]	10.9	0.9114

Compare expression of checked genes

Lus10004352 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.