Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G17250 658 / 0 unknown protein AT5G47580 630 / 0 ASG7 ALTERED SEED GERMINATION 7, unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028936 [exp] 1196 / 0 AT4G17250 525 / 3e-179 unknown protein Lus10000731 [exp] 843 / 0 AT4G17250 586 / 0.0 unknown protein Lus10008508 [exp] 827 / 0 AT4G17250 583 / 0.0 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G123100 [exp] 824 / 0 AT5G47580 725 / 0.0 ALTERED SEED GERMINATION 7, unknown protein Potri.003G110700 [exp] 798 / 0 AT5G47580 697 / 0.0 ALTERED SEED GERMINATION 7, unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10004355 pacid=23161723 polypeptide=Lus10004355 locus=Lus10004355.g ID=Lus10004355.BGIv1.0 annot-version=v1.0 ATGGTGGGTTGCAGTGCGGACGGGAACCTGAACGAGGCAAAGTACACTCAGCCTCTACCATGGATTGGGCTCTACGTAGCAGCAGCTTCTCTAGCCTGTG CAATAGCCATGGCTGCAGATCTCGTCCACGGCTGTCGACACAGGAACTTCTGGTTCCCTAGTAAGTTCTTCTCCATCAACGCCACTTCCCTGACCGTGAT AACAGTTGCAGTCAAATTCTCCGTGGATCTCAACACCCCCATGCCCAGCCGTGTCGACCAGCTCTCCAAGCTAAGCAGCGGGGTATTGCTCTGTGTAGTG ATTGCAAACTCCATGCCTTCGCTGGGGACGGTGAAGAACAAGGAGATCATGATGAACATTATCGCCTTTGCGATACTTGTCGTCACTGTTTTCGTCAACA TGGCCATCCAATTAGGCACGGGAGTTATCTACATCTGCTGGAGGGAGCATGCTGCTATCATGTCTCTTATGCTCGTGATGCTTGCGATTCTTGGCTTCTC TGCTTTAGCTGTGCCAGCGACTAAGAGTGAGTTGGAGTCCAAGTACAAGAAGAGATGTGAGATGGCGCTGCACGAAGGGTCAAAAGATATGAACAAGAGA TCCCCAGAGGAGCTTAAGGAAGACCTAATGAAGTTCTGGATAATGGCACATACCAGCAATCCACAATTCGTGATGGGGCGTTCGGTTACTTGTACGGCTT CAGGTGCACTATGTCTCCTTGGTGCTACAGTTCTAGCTGAGGCGATGCTCCGATCATTTTTTTTGCCGGGATCGTTTGAGTTCTGTACAGGAGAGTCTGA CTACAAGTGGTCAACTGTTTTGGTTCTCATTGCGCAGACAGTTGCAGTTGGGGTTGGTTCTGTTGCCCCTGCAGTCAGGTGGTTCACTTCAGTGTATTTC AGGTGTCCTAGAACTGGGAAGAAAACCAGTGGAGGGACATACTTCAAGGTGGAGAAGTATTGGATTCAGTTTCTAGTGGAGACCAAAGAGTGTCCATTCA TACACATCAAAAGCCAGCATCTTAGGAAACTTGCACATGACATGAAGCACAGACTTCTGGAAACATGTATTCGAGCACAAATGGGAATCATAATAGGATG CAAAGCTATTCAATACATATGCATCTTCTGTGCAGCCCGAGTTGAGCAGGTCTGTGTTGCCTGCAAAAAGTTAAAGAAGTCGTTACCAAGTAATAGCATT TCCGTTGATCCGGGACTGGAAGTGACCAAAAAAATTGATCTAAGTCGCTTTGTTTTGCATCTTGAAGGCGAGGAAAACCTTGTAGAAGTGACAATGAGGA AGAATTGTACTGCCACGGATCACTGGATGCAAAAGGGCAAAAGGAGACAGCCTAAGCTTTTGATAGAGCTATTGAGAAAAGCAAACTTTGCAGAAGGTTT TGACGGAGTAAGAGCATTTGACTGTGACAAAATTTGCAGCTTGGAAGGTGAAGAACCTCCACAGTGTTGGTCACTTCCCATCGTTACTTTGACAGCAATT GCAGTTGCACTTCCGAATGTCAGCAGCTGTTCTGTCAAACAATTGATACGGAGTGTACACGAGGGACTCATGTATGTCACTCTCGTAGAAAAACACGAGG ATGGAAAAGAAGAGCTAATAAACATTAGAAGAGCAGCTAACCATGTATGGTCCGGGGTCGACATTTACCATAAATGGTTAGATGTAGATCTTGCTAAACT GTCCCTGAGAGCAGAAACCACAAGAGAAGTACTCGAAGGGCTTGCCGAAGCCGGGAAGAAGAGATTTAAAGACTTCAAGAAAGCATATCCATCACAATGT ATGAGTGAGAACCCTTCAGTGTGGCACCCAAAGTTATTGGCAGCTAATTCCATGTACAGAATAAGCAGCACAGTTCTGGAAAATTTCCACCGCGAATCAG GTGAGAGGTTATTTGGTAAAATATCTATGCTGATCGCCGACATATTGGCTGCTTGTCTCACCAACTTGCGACCAGTAATCTTCTGCAAGTGTTTGAAGAG CACAATTGAAGACAGGAAAGGCAGTGTAAGGGAAGCAGTTTACCTCCTTGGCGAGACAGAAGAGATAGTGAAACTTCTAGACCGAAGTGCAGTATCTGTT GAGTATCCAGACAAAATTACAAGCATTTCTCACTGGCATTCTTTCCAGAAATCGGATAAACCTCCGGCAATAGATACCCTGTCAACAATGGCTGATGCAT GTCTGTTGAGTTCAAAAGACCTCTGCCTAACCATTGAGTGA
AA sequence Show only first row Show all	>Lus10004355 pacid=23161723 polypeptide=Lus10004355 locus=Lus10004355.g ID=Lus10004355.BGIv1.0 annot-version=v1.0 MVGCSADGNLNEAKYTQPLPWIGLYVAAASLACAIAMAADLVHGCRHRNFWFPSKFFSINATSLTVITVAVKFSVDLNTPMPSRVDQLSKLSSGVLLCVV IANSMPSLGTVKNKEIMMNIIAFAILVVTVFVNMAIQLGTGVIYICWREHAAIMSLMLVMLAILGFSALAVPATKSELESKYKKRCEMALHEGSKDMNKR SPEELKEDLMKFWIMAHTSNPQFVMGRSVTCTASGALCLLGATVLAEAMLRSFFLPGSFEFCTGESDYKWSTVLVLIAQTVAVGVGSVAPAVRWFTSVYF RCPRTGKKTSGGTYFKVEKYWIQFLVETKECPFIHIKSQHLRKLAHDMKHRLLETCIRAQMGIIIGCKAIQYICIFCAARVEQVCVACKKLKKSLPSNSI SVDPGLEVTKKIDLSRFVLHLEGEENLVEVTMRKNCTATDHWMQKGKRRQPKLLIELLRKANFAEGFDGVRAFDCDKICSLEGEEPPQCWSLPIVTLTAI AVALPNVSSCSVKQLIRSVHEGLMYVTLVEKHEDGKEELINIRRAANHVWSGVDIYHKWLDVDLAKLSLRAETTREVLEGLAEAGKKRFKDFKKAYPSQC MSENPSVWHPKLLAANSMYRISSTVLENFHRESGERLFGKISMLIADILAACLTNLRPVIFCKCLKSTIEDRKGSVREAVYLLGETEEIVKLLDRSAVSV EYPDKITSISHWHSFQKSDKPPAIDTLSTMADACLLSSKDLCLTIE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G17250			unknown protein		Lus10004355 [exp]	0	1
AT1G56460			HIT zinc finger ;PAPA-1-like c...		Lus10031419 [exp]	2.6	0.8146
AT3G45040			phosphatidate cytidylyltransfe...		Lus10037383 [exp]	3.5	0.7145
AT4G12010			Disease resistance protein (TI...		Lus10016029 [exp]	5.2	0.7502
AT3G44480		COG1, RPP10, RP...	recognition of peronospora par...		Lus10007455 [exp]	6.5	0.7669
AT1G18070			Translation elongation factor ...		Lus10009038 [exp]	9.4	0.6984
AT1G26810		GALT1	galactosyltransferase1 (.1)		Lus10030467 [exp]	12.4	0.7192
AT3G48410			alpha/beta-Hydrolases superfam...		Lus10017051 [exp]	13.3	0.7194
AT4G22840			Sodium Bile acid symporter fam...		Lus10008914 [exp]	14.0	0.7050
AT4G03340			Core-2/I-branching beta-1,6-N-...		Lus10031626 [exp]	14.1	0.7416
AT2G26790			Pentatricopeptide repeat (PPR)...		Lus10020298 [exp]	16.7	0.6853

Compare expression of checked genes

Lus10004355 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.