Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G43680 174 / 5e-53 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040152 [exp] 487 / 7e-175 AT5G43680 177 / 2e-54 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G045500 [exp] 330 / 8e-114 AT5G43680 194 / 8e-62 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10004356 pacid=23151924 polypeptide=Lus10004356 locus=Lus10004356.g ID=Lus10004356.BGIv1.0 annot-version=v1.0 ATGTTTGGTATCTCTTATGGCGAAATCTTCATCTTGCTTGGAGCCACCGCAGCTCTAATTGGGCCGAAAGATTTGCCTATAATAGCAAGGACTGCTGGGA GGCTAACTGGTCGAGCCATAGCATATGTTCAATTGGCTCGTGGCCAATTTGAGTCTGTGATGCAGCAATCTCAAGCTCGACAGGTTCACAAGGAACTTCA AGATAAGATGGCTCAAATGGAGTCCATCCTTTATGAGATTAGAAGCACTTCTATGTTGAAACCTGGACCAATGACTCGGAAGATTATTGATGATCTTGAT AACTCATCGAAAGCTAATGACAATGAAGAGGCAGCCAATTCTGGTGTAGTAAATGTTTCAACAGCTACTGTCTCTCAAGTTTCTACCGAACAAAGTCATA CTGCGAGTATATCAACAAGTACCGTCTCACAGATCTACACATTGAAAGTCTCAGATAATACCAATATGCACAGCCAAGCAACTGCTTATGCTAGATTGGC AGAATCTGCAGCCCTCAAAGCTAGTATGTCGCAGAATGGTTTGGATTCAAGACAGCAGATGGACGATCTTGGTCTCATTAATATCTTGCCAGTATCGGCT GAAAGCACCGGGATGTTACCTAATCGTCAAGACTCTGCATATGTTTATGCTGTAGTAGGAAATGCGAATGGATCGGATATTTTGTTGGAAGCTATATTGG AGGCTGAGGTGGCTCACAACGCTAAAGATTTCTTCGCACAACCTGAAAATCAAATAAAGCAAGCAGGAGAGCTCGATGGATCAGCAAGATGCATGTCGAA CATTGAAATGTGTGCTTCGGATACTGCTGCTTCTTTCTCGAGCACCCTTGCTGGGGACTATACAAGCCACGAGGAATCTAGTCGCGACATGGGAGATTAT TTGTCTTTGTCACGGTCGACAGTAGACACCCATGGCTTGGTCCGAGTTGATCTCAAACTGCTACTCTTTGTTAAGCGAGCTTGCTGGAGACGGATTCCAC CCACCAAAAATATGTTCCTGGTCGGCATTAATCAATCGTAA
AA sequence Show only first row Show all	>Lus10004356 pacid=23151924 polypeptide=Lus10004356 locus=Lus10004356.g ID=Lus10004356.BGIv1.0 annot-version=v1.0 MFGISYGEIFILLGATAALIGPKDLPIIARTAGRLTGRAIAYVQLARGQFESVMQQSQARQVHKELQDKMAQMESILYEIRSTSMLKPGPMTRKIIDDLD NSSKANDNEEAANSGVVNVSTATVSQVSTEQSHTASISTSTVSQIYTLKVSDNTNMHSQATAYARLAESAALKASMSQNGLDSRQQMDDLGLINILPVSA ESTGMLPNRQDSAYVYAVVGNANGSDILLEAILEAEVAHNAKDFFAQPENQIKQAGELDGSARCMSNIEMCASDTAASFSSTLAGDYTSHEESSRDMGDY LSLSRSTVDTHGLVRVDLKLLLFVKRACWRRIPPTKNMFLVGINQS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G43680			unknown protein		Lus10004356 [exp]	0	1
AT5G03450			Transducin/WD40 repeat-like su...		Lus10026534 [exp]	1.0	0.8383
AT3G52120			SWAP (Suppressor-of-White-APri...		Lus10015703 [exp]	4.2	0.8298
AT1G09730			Cysteine proteinases superfami...		Lus10000917 [exp]	8.5	0.8090
AT2G22300	CAMTA	SR1, CAMTA3	CALMODULIN-BINDING TRANSCRIPTI...		Lus10041704 [exp]	8.7	0.8208
AT4G09140		ATMLH1	ARABIDOPSIS THALIANA MUTL-HOMO...		Lus10034734 [exp]	11.8	0.7978
AT2G39260			binding;RNA binding (.1)		Lus10040364 [exp]	12.1	0.8000
AT1G01770			unknown protein		Lus10036349 [exp]	12.3	0.7986
AT2G40190		LEW3	LEAF WILTING 3, UDP-Glycosyltr...		Lus10008975 [exp]	12.4	0.7622
AT1G47570			RING/U-box superfamily protein...		Lus10033472 [exp]	17.2	0.8027
AT3G13225			WW domain-containing protein (...		Lus10010579 [exp]	18.6	0.7318

Compare expression of checked genes

Lus10004356 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.