Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G16970 590 / 0 Protein kinase superfamily protein (.1) AT5G26751 74 / 2e-13 ATSK11 ,SK 11 ARABIDOPSIS THALIANA SHAGGY-RELATED KINASE 11, shaggy-related kinase 11 (.1) AT3G05840 73 / 3e-13 ATSK12 Protein kinase superfamily protein (.1.2) AT4G18710 68 / 4e-12 DWF12, UCU1, BIN2, ATSK21 ULTRACURVATA 1, DWARF 12, BRASSINOSTEROID-INSENSITIVE 2, SHAGGY-LIKE KINASE 21, Protein kinase superfamily protein (.1.2) AT2G30980 69 / 9e-12 ASKdZeta, ATSK23, BIL1, ATSK2-2 BIN2-LIKE 1, SHAGGY-LIKE PROTEIN KINASE 23, A. THALIANA SHAGGY-LIKE KINASE GROUP 2 2, SHAGGY-related protein kinase dZeta (.1) AT5G14640 67 / 2e-11 ATSK13 shaggy-like kinase 13 (.1) AT1G06390 67 / 4e-11 ATGSK1, GSK1, ATSK22, BIL2, ATSK2-3 BIN2-LIKE 2, SHAGGY-LIKE PROTEIN KINASE 22, A. THALIANA SHAGGY-LIKE KINASE GROUP 2 3, GSK3/SHAGGY-like protein kinase 1 (.1.2) AT3G48750 65 / 6e-11 CDKA1, CDC2A, CDKA;1, CDC2AAT, CDK2 cell division control 2 (.1) AT1G57870 63 / 6e-10 ATSK42 shaggy-like kinase 42 (.1.2.3) AT1G09840 62 / 9e-10 AtHIR1, ATSK41 hypersensitive induced reaction 1, shaggy-like protein kinase 41 (.1.2.3.4.5.6)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040153 [exp] 605 / 0 AT4G16970 355 / 1e-115 Protein kinase superfamily protein (.1) Lus10001519 [exp] 77 / 2e-14 AT5G26751 790 / 0.0 ARABIDOPSIS THALIANA SHAGGY-RELATED KINASE 11, shaggy-related kinase 11 (.1) Lus10031440 [exp] 77 / 2e-14 AT5G26751 790 / 0.0 ARABIDOPSIS THALIANA SHAGGY-RELATED KINASE 11, shaggy-related kinase 11 (.1) Lus10025395 [exp] 74 / 2e-13 AT4G18710 706 / 0.0 ULTRACURVATA 1, DWARF 12, BRASSINOSTEROID-INSENSITIVE 2, SHAGGY-LIKE KINASE 21, Protein kinase superfamily protein (.1.2) Lus10015274 [exp] 74 / 3e-13 AT4G18710 688 / 0.0 ULTRACURVATA 1, DWARF 12, BRASSINOSTEROID-INSENSITIVE 2, SHAGGY-LIKE KINASE 21, Protein kinase superfamily protein (.1.2) Lus10007291 [exp] 71 / 2e-12 AT4G18710 709 / 0.0 ULTRACURVATA 1, DWARF 12, BRASSINOSTEROID-INSENSITIVE 2, SHAGGY-LIKE KINASE 21, Protein kinase superfamily protein (.1.2) Lus10029240 [exp] 71 / 3e-12 AT4G18710 708 / 0.0 ULTRACURVATA 1, DWARF 12, BRASSINOSTEROID-INSENSITIVE 2, SHAGGY-LIKE KINASE 21, Protein kinase superfamily protein (.1.2) Lus10018850 [exp] 67 / 3e-11 AT4G00720 747 / 0.0 SHAGGY-LIKE PROTEIN KINASE THETA, shaggy-like protein kinase 32 (.1) Lus10041360 [exp] 66 / 7e-11 AT4G00720 731 / 0.0 SHAGGY-LIKE PROTEIN KINASE THETA, shaggy-like protein kinase 32 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G082600 [exp] 713 / 0 AT4G16970 603 / 0.0 Protein kinase superfamily protein (.1) Potri.001G151900 [exp] 711 / 0 AT4G16970 615 / 0.0 Protein kinase superfamily protein (.1) Potri.005G005400 [exp] 76 / 5e-14 AT5G26751 789 / 0.0 ARABIDOPSIS THALIANA SHAGGY-RELATED KINASE 11, shaggy-related kinase 11 (.1) Potri.013G004700 [exp] 74 / 3e-13 AT5G26751 782 / 0.0 ARABIDOPSIS THALIANA SHAGGY-RELATED KINASE 11, shaggy-related kinase 11 (.1) Potri.014G115600 [exp] 70 / 4e-12 AT5G26751 782 / 0.0 ARABIDOPSIS THALIANA SHAGGY-RELATED KINASE 11, shaggy-related kinase 11 (.1) Potri.002G155000 [exp] 70 / 5e-12 AT4G00720 772 / 0.0 SHAGGY-LIKE PROTEIN KINASE THETA, shaggy-like protein kinase 32 (.1) Potri.002G190500 [exp] 69 / 5e-12 AT5G26751 781 / 0.0 ARABIDOPSIS THALIANA SHAGGY-RELATED KINASE 11, shaggy-related kinase 11 (.1) Potri.004G059000 [exp] 68 / 1e-11 AT4G18710 728 / 0.0 ULTRACURVATA 1, DWARF 12, BRASSINOSTEROID-INSENSITIVE 2, SHAGGY-LIKE KINASE 21, Protein kinase superfamily protein (.1.2) Potri.003G005900 [exp] 66 / 6e-11 AT1G09840 732 / 0.0 hypersensitive induced reaction 1, shaggy-like protein kinase 41 (.1.2.3.4.5.6) Potri.011G068600 [exp] 66 / 8e-11 AT4G18710 723 / 0.0 ULTRACURVATA 1, DWARF 12, BRASSINOSTEROID-INSENSITIVE 2, SHAGGY-LIKE KINASE 21, Protein kinase superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10004357 pacid=23151936 polypeptide=Lus10004357 locus=Lus10004357.g ID=Lus10004357.BGIv1.0 annot-version=v1.0 ATGGGAACTCACTCATCCGTCTCCCAACAACTCGTCCTACGCGATTCGCTCTCCGTCGTCACCAGCACCGCCGATGTCAACTCTGATTCCCGAAAAGCAT GGTACCTTCTCTCACTCATCCTCTCCATCGGCCGACCAGTGCCGCTTCCTGAGCTATGCTTGCGCTGTACTCCGTTCCGAGCTACTCCGGATCTCATCCG CCGTCTTTGCTCAGTCCCGAACTCGCCTATCGCGTTGACCTACCTACACGGAGAAGGTCACATCAATGGCGGATATGTGAAAGTTTCTATGCTCGGTAGC TTGTGGATCAGAGCGCTCATTTCTAACAAGCAGAAGCAATTTGGGATGGTTCCTCTGAATGTTGACATGGAAAATGAAGATCTAGAGACTACTCGTCCCT TTAAAAGATTTCACGCTGCTTGCTTAGAGGCTCCCTTTTCTACTGTTGAGAACGTCTCCTGGGATGGAAGATCCGTATCAGAATTTATCAAAATCTTGCT GAATAACAAGGTTGCGATTCCGGAATGCTTCACCAAAACAGTTGGTAGTAGATTAGAGTACAGACTGGAGGGCATGGAAAACAAGCTTACCTCAGCTGCA ATTCTGGAAGGGGAGGAGCAGAAATCAGTCACTTCAGCTGAAGTTATTGATTTTCAAACAGTGAATATGTGTATGCATGAAGCAGAATTTTACACAAGAA CCAACGGGGATGCTGAAATTTGTGTTAGAGAAGAAGTCCATGATAGTGCTATAATTCCAATGGAGTTCCAGATTGCTAATGACTTGTTTGATACGACCAA AGCAGTTGTTAGTAGATTGGAGTATAGACTGGAGGACATGGAGCATATGGAAGATGAGCTTATCTCAGCTGCAATTGTAGAAGTGGAGAAGCAGAAATCA GTCACTTCTGCTGAAGCTATTGGGGATACTTTCCAAACAGTGAATAAGTGTACGCATGAAGCAGAAAAGTTTTACTCAAGAACCAACGGCGATGCTGAAA TTTGTGTTAGAGAAGTCCATGATAGTGCTATAATTTCAATAGAGGTCCAGAGTGCTAATGACTTGTTTGATACGACCAATCAGCTCAATGTTGAAACCTT ACGCATCGTAGACAATAAAGATATTGGTTTTGCTGGAATTCAAGTAGAATCTAATGGGAACAATGCAACAGTAAAGATTGGTCCTCCTGGTTTGTCAAAT GAAAATGGTTGTGAAGAAAAGAAGCTGCAGCCATCTTCAAAGAAAGGGGGAGTTCCGACAGATGCTAATAACCAGAATGGATCGAAGAGACGAGGTTTCT CTGATGCTGAGAGACACTTGTCAAAGTCCTCTCCCAAAACTATGATTGCAAACAGATATGGGATGCCTTCCAGACATGAGGCTCTCCGTGAGTCTTTTGA TGGAATTAAAAAGGCTATCCCGGTCCAAGGTAATCAGCAGCAGGGACTTGACCACAAAAAAACTATTTCCCGAAGTTCAAAGCGGAAGCATGAGGATATG GAAAGAAGAGAAGGAAGGAATGATGTTGCCGTCATTTCCTCTGATCAAGTTGAACCTGAGGGCTTACCTTCTTTTGAATCCTACATTGTGGAAGAGGAGG AAGGTTCAGGTGGCTATGGAATTGTATATAGGGCAAGGAAGAAAGATGACGGAATGACTGTAGCCATTAAATGCCCTCATGAAAAAGCACACAAACAGCA TGTCATCAATGAACGAAGGATGCTGGAGCAGTTTGGGGGTAAAAACTGTATAATAAGATACGAAGGCTGTATCAAGAGTGAAACTTCTGAATGTTTTGTT CTGGAGCACGTTGACCACGACAGACCTGAGGTACTGAAGAAAGAAATAGATCTGGTGCAGCTAAGGTGGTACGGGTATTGCCTTTTCAGAGCTCTTTCCA GTCTTCATAAGCAGGCAGGAATTGTTCACAGAGATGTCAAACCTGGCAACTTCCTCTTCTCCCGCAAGGCTAGTAAGGGTTATCTCATCGATTTTAACCT CGCTTTGGTTAGTTGTACTAGCCTTTGCTCTACTTATCTGTCTGATGACCTCATTCGTCCGAAACTTATAGTTCTCCTTTTATGGCAGGATCTGCAACAG AAGTATGGAACAAAAAAAATCAAGGCTGCGAATGATAAAAACTTCAGCGATGTAATGCTTCAAAAGACCAAATCTTTTCAGCTTCAGAATTCTAAATCCT TGGATATAGTCAGTCGTGAGGAATCTAAGGGTTCGAAGAAAATTTTAGAACCAAGGAACTCGAAAAAGAAGACTGGTGGCTCCTTGAAGGCTCGGAATGA CATGGGTCGATGGAATTTCACACAAAGCCAAGGTGCAGAAGGTTCAGGAATAACTTCTGTAAAGGACGTGACCAGTACTAGGACGCCTTCAGCAGAAAGG GTAAGACAGCCGTTACCAGTTCTTGGCAGGAAGGGGCTCCTGAATTTTTTGAAGGATACAATAGATTCCCCAAATCACGAAGCATCAAGCGTTCCCACTT TTGCAAGGAAGAGGGTTGCTGCACCTTCTTCTAAGGTGGATAGAAGACATATATATGTTACTCCAATGCCTCTGCAACCATCTAGCACAACAATTACAGT TACTGGCTTAACCAATAATAAAGATGCAATGTTGAAGAAAGAAGGGCCTTGTGTGGGAACAAAAGGTTTTCGTGCTCCAGAGGTATTGCTGAGATCTCTG TATCAAGGTCCCAAGGTTGATTCATGGTCGGCTGGGGTAACCTTACTTTATCTAATGATTGGAAGAACGCCTTTCTACGGTGAACCTGAACAGAACATAA AGGAAATAGCTAAGTTAAGAGGCAGTGAAGATCTTTGGGAAGTTGCAAAGCTACACGATCGAGAATCCTCATTTCCACCGGATCTCTACACCAGTCAGTC CCTACCATCCTATTCACTCTGGGAATGGTGCAAAATCAACACCAAAAGAAACGATTTTCTCGAGCAAATGCCGGCTTCACTCATGGATCTTGTTGACAAG TGTTTAACAGTAAACCCGAGATCCAGAATCAGCGCTGAGGATGCTCTAAACCACGAGTTTTTCGGTCCAATAAACGAGAGGCTCAAGAAGCCAAAGCTGG TTCGACCGGGTTCTAACAAAGACTCAGGCTCTAGGCTTTCCCTACACAGACAAAGCTCAACGGAACCTTTAGCTGTCTTTGATCAGGAGCCATAG
AA sequence Show only first row Show all	>Lus10004357 pacid=23151936 polypeptide=Lus10004357 locus=Lus10004357.g ID=Lus10004357.BGIv1.0 annot-version=v1.0 MGTHSSVSQQLVLRDSLSVVTSTADVNSDSRKAWYLLSLILSIGRPVPLPELCLRCTPFRATPDLIRRLCSVPNSPIALTYLHGEGHINGGYVKVSMLGS LWIRALISNKQKQFGMVPLNVDMENEDLETTRPFKRFHAACLEAPFSTVENVSWDGRSVSEFIKILLNNKVAIPECFTKTVGSRLEYRLEGMENKLTSAA ILEGEEQKSVTSAEVIDFQTVNMCMHEAEFYTRTNGDAEICVREEVHDSAIIPMEFQIANDLFDTTKAVVSRLEYRLEDMEHMEDELISAAIVEVEKQKS VTSAEAIGDTFQTVNKCTHEAEKFYSRTNGDAEICVREVHDSAIISIEVQSANDLFDTTNQLNVETLRIVDNKDIGFAGIQVESNGNNATVKIGPPGLSN ENGCEEKKLQPSSKKGGVPTDANNQNGSKRRGFSDAERHLSKSSPKTMIANRYGMPSRHEALRESFDGIKKAIPVQGNQQQGLDHKKTISRSSKRKHEDM ERREGRNDVAVISSDQVEPEGLPSFESYIVEEEEGSGGYGIVYRARKKDDGMTVAIKCPHEKAHKQHVINERRMLEQFGGKNCIIRYEGCIKSETSECFV LEHVDHDRPEVLKKEIDLVQLRWYGYCLFRALSSLHKQAGIVHRDVKPGNFLFSRKASKGYLIDFNLALVSCTSLCSTYLSDDLIRPKLIVLLLWQDLQQ KYGTKKIKAANDKNFSDVMLQKTKSFQLQNSKSLDIVSREESKGSKKILEPRNSKKKTGGSLKARNDMGRWNFTQSQGAEGSGITSVKDVTSTRTPSAER VRQPLPVLGRKGLLNFLKDTIDSPNHEASSVPTFARKRVAAPSSKVDRRHIYVTPMPLQPSSTTITVTGLTNNKDAMLKKEGPCVGTKGFRAPEVLLRSL YQGPKVDSWSAGVTLLYLMIGRTPFYGEPEQNIKEIAKLRGSEDLWEVAKLHDRESSFPPDLYTSQSLPSYSLWEWCKINTKRNDFLEQMPASLMDLVDK CLTVNPRSRISAEDALNHEFFGPINERLKKPKLVRPGSNKDSGSRLSLHRQSSTEPLAVFDQEP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G16970			Protein kinase superfamily pro...		Lus10004357 [exp]	0	1
AT2G16440		MCM4	MINICHROMOSOME MAINTENANCE 4, ...		Lus10017491 [exp]	1.0	0.9743
AT3G18730		BRU1, MGO3, TSK	TONSOKU, MGOUN3, BRUSHY1, tetr...		Lus10037327 [exp]	4.5	0.9383
AT4G21070		ATBRCA1	ARABIDOPSIS THALIANA BREAST CA...		Lus10036151 [exp]	4.6	0.9432
AT3G10180			P-loop containing nucleoside t...		Lus10012103 [exp]	4.9	0.9521
AT1G20693		HMGBETA1, NFD2,...	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Lus10035991 [exp]	4.9	0.9364
AT1G20720			RAD3-like DNA-binding helicase...		Lus10016027 [exp]	7.9	0.9159
AT1G59540		ZCF125	P-loop containing nucleoside t...		Lus10018661 [exp]	10.1	0.9479
AT2G01120		ORC4, ATORC4	origin recognition complex sub...		Lus10007944 [exp]	11.4	0.9359
AT5G67100		ICU2	INCURVATA2, DNA-directed DNA p...		Lus10019338 [exp]	12.8	0.9376
AT1G21730			P-loop containing nucleoside t...		Lus10025688 [exp]	13.0	0.9359

Compare expression of checked genes

Lus10004357 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.