Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G17550 697 / 0 AtG3Pp4 glycerol-3-phosphate permease 4, Major facilitator superfamily protein (.1) AT3G47420 548 / 0 AtG3Pp1, ATPS3 Glycerol-3-phosphate permease 1, phosphate starvation-induced gene 3 (.1) AT1G30560 502 / 4e-174 AtG3Pp3 glycerol-3-phosphate permease 3, Major facilitator superfamily protein (.1) AT2G13100 489 / 4e-169 AtG3Pp5 glycerol-3-phosphate permease 5, Major facilitator superfamily protein (.1.2.3) AT4G25220 467 / 2e-160 AtG3Pp2, RHS15 glycerol-3-phosphate permease 2, root hair specific 15 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040154 [exp] 989 / 0 AT4G17550 734 / 0.0 glycerol-3-phosphate permease 4, Major facilitator superfamily protein (.1) Lus10031153 [exp] 531 / 0 AT3G47420 695 / 0.0 Glycerol-3-phosphate permease 1, phosphate starvation-induced gene 3 (.1) Lus10027210 [exp] 530 / 0 AT3G47420 705 / 0.0 Glycerol-3-phosphate permease 1, phosphate starvation-induced gene 3 (.1) Lus10040002 [exp] 491 / 1e-169 AT2G13100 708 / 0.0 glycerol-3-phosphate permease 5, Major facilitator superfamily protein (.1.2.3) Lus10038923 [exp] 457 / 6e-158 AT3G47420 586 / 0.0 Glycerol-3-phosphate permease 1, phosphate starvation-induced gene 3 (.1) Lus10027211 [exp] 341 / 1e-113 AT3G47420 454 / 9e-159 Glycerol-3-phosphate permease 1, phosphate starvation-induced gene 3 (.1) Lus10031729 [exp] 111 / 6e-29 AT3G47420 155 / 2e-46 Glycerol-3-phosphate permease 1, phosphate starvation-induced gene 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G152300 [exp] 746 / 0 AT4G17550 692 / 0.0 glycerol-3-phosphate permease 4, Major facilitator superfamily protein (.1) Potri.003G082366 [exp] 704 / 0 AT4G17550 624 / 0.0 glycerol-3-phosphate permease 4, Major facilitator superfamily protein (.1) Potri.001G124200 [exp] 565 / 0 AT3G47420 711 / 0.0 Glycerol-3-phosphate permease 1, phosphate starvation-induced gene 3 (.1) Potri.003G109300 [exp] 552 / 0 AT3G47420 694 / 0.0 Glycerol-3-phosphate permease 1, phosphate starvation-induced gene 3 (.1) Potri.018G115000 [exp] 518 / 3e-180 AT2G13100 699 / 0.0 glycerol-3-phosphate permease 5, Major facilitator superfamily protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF07690 [flax] [poplar] MFS_1 Major Facilitator Superfamily
Representative CDS sequence Show only first row Show all	>Lus10004358 pacid=23151906 polypeptide=Lus10004358 locus=Lus10004358.g ID=Lus10004358.BGIv1.0 annot-version=v1.0 ATGGACAGCAATTTATCGCTGACGAGGCAAATTCCGCCAGGGATTAAGCTTCTCAGAGCGATCAGAGGCCGAGATTGGACTCTGAGAACCTACCGGTACG TGATCCTGCTCGTCACCTTCATCGCCTACGCATGCTACCACGCTTCGAGGAAACCCAGCAGCATCGTCAAGAGCGTTCTCGATCCGGATCCGGCTAAACC ATTGAATGTATCTATAGGTAATGATCCTTACCCTTGGCCGATCGGAAAAGTGTTTATAACGAACGAAATGACTCTTTCTAATGTGAGCAAGAAAGGATGG GAGCCGTTTAACGGGAAAGACGGGACGTCGAAATTGGGCGAAATCGACGTCGCGTTCCTTGCGTGCTACTCGTTCGGCATGTACATCGCCGGGCATTTAG GAGATAAGCTTGATTTGCGGCTCTTCTTGACGTCCGGGATGGTTGGGAGTGGGATATTCGTAGGGCTGTTTGGGATGGGGTACTTCTGGAATGTTCATGT GTTCTGGTTCTATTTGGCTATGCAAATGGTTGCTGGATTGTTTCAAGCCACGGGATGGCCTTCTGTTGTGGCTGTGATTGGTAACTGGTTTGGGAAGAGG AAGAGAGGGCTGATCATGGGGATATGGAATGCGCATACCTCTGTTGGAAACATTAGTGGTTCGCTTCTTGCTGCTGCGGTATTGAGCTATGGATGGGGGT GGTGTTTCATTGTTCCTGGAGCTTTCATTGTGTTGGGAGGGATATTGGTCTTCTTTTTTCTGGCTGCTTATCCTGAGGATATTGGGTTTACTTATGGCCA GTTGATGGCCAGTGATGATAAGGGGCAAGACGTGGAGGATCAGAACCGTAGTGCACCGGTTGCTGGTGGCAATGATGCTTATGGATCGGGACTTAGGACG AGTGTCGGGCTTCTTGAAGCTTGTTCGATACCGGGAGTTATACCGTTTGCATTGTGTTTGTTCTTCTCCAAACTCGTGGCCTATACATTCTTGTACTGGT TGCCTTTCTACCTCAGTCAGACAGAAATTGGTGGGGAGTTCATGTCTGTGAAGTCTGCTGGAAATCTCTCTACTCTGTTTGACGTGGGAGGCATAGTTGG TGGGATCCTTGCAGGATACATATCTGACAGGCTTAAAGCTCGAGCTATAACAGCAGCTACTTTCATGTATTTGGCAATTCCAGCGATGCTGCTATACCGC TGGTACGGGAGTGTCTCCCAATCTCTGAACATCGTACTGATGATGATTGCTGGCTTATTTGTGAACGGCCCATATGCACTCATCACTACAGCAGTCTCTG CGGACCTTGGCACCCACAGCTCTCTTAGAGGGGATTCTCGAGCACTGGCTACTGTCACAGCTATCATTGATGGAACTGGATCGATTGGAGCAGCCCTTGG CCCTCTTCTAACTGGGTTCCTATCGACACATGGATGGAATTTGGTGTTTGTGATGCTGATGCTTTGTGCTCTCGTTGCTGGGCTTCTGTTAACACGTCTA GTAATTGCTGAAATTGCTGAAAAACCTGATCGGCCAATGCCTGGACAGCCTGGACAAACAGAGTATATGTTAGCTTTTCACATATTCGGGCATTTGTTTC TAACTGGAACATTCTGGGATCTAACTTACCTTAACATTCTGTTGTCTGCAGCTCCAGGAACCGAGCCACTTCTAGGAAATCGGAGGTGA
AA sequence Show only first row Show all	>Lus10004358 pacid=23151906 polypeptide=Lus10004358 locus=Lus10004358.g ID=Lus10004358.BGIv1.0 annot-version=v1.0 MDSNLSLTRQIPPGIKLLRAIRGRDWTLRTYRYVILLVTFIAYACYHASRKPSSIVKSVLDPDPAKPLNVSIGNDPYPWPIGKVFITNEMTLSNVSKKGW EPFNGKDGTSKLGEIDVAFLACYSFGMYIAGHLGDKLDLRLFLTSGMVGSGIFVGLFGMGYFWNVHVFWFYLAMQMVAGLFQATGWPSVVAVIGNWFGKR KRGLIMGIWNAHTSVGNISGSLLAAAVLSYGWGWCFIVPGAFIVLGGILVFFFLAAYPEDIGFTYGQLMASDDKGQDVEDQNRSAPVAGGNDAYGSGLRT SVGLLEACSIPGVIPFALCLFFSKLVAYTFLYWLPFYLSQTEIGGEFMSVKSAGNLSTLFDVGGIVGGILAGYISDRLKARAITAATFMYLAIPAMLLYR WYGSVSQSLNIVLMMIAGLFVNGPYALITTAVSADLGTHSSLRGDSRALATVTAIIDGTGSIGAALGPLLTGFLSTHGWNLVFVMLMLCALVAGLLLTRL VIAEIAEKPDRPMPGQPGQTEYMLAFHIFGHLFLTGTFWDLTYLNILLSAAPGTEPLLGNRR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G17550		AtG3Pp4	glycerol-3-phosphate permease ...		Lus10004358 [exp]	0	1
AT1G02820			Late embryogenesis abundant 3 ...		Lus10008169 [exp]	12.3	0.8810
AT2G37470			Histone superfamily protein (....		Lus10023753 [exp]	12.5	0.8782
AT2G30530			unknown protein		Lus10019115 [exp]	15.3	0.8579
					Lus10022462 [exp]	18.2	0.8579
AT4G23760			Cox19-like CHCH family protein...		Lus10032354 [exp]	18.8	0.8486
AT5G66870	AS2	LBD36, ASL1	LATERAL ORGAN BOUNDARIES DOMAI...		Lus10022463 [exp]	22.4	0.8790
AT4G01630		ATEXP17, ATHEXP...	EXPANSIN 17, expansin A17 (.1)		Lus10009253 [exp]	28.2	0.8596
AT4G27950	AP2_ERF	CRF4	cytokinin response factor 4 (....		Lus10005149 [exp]	38.8	0.8414
AT5G20570		HRT1, ROC1, RBX...	REGULATOR OF CULLINS-1, RING-b...		Lus10015667 [exp]	41.4	0.8576
AT2G47800		EST3, ATMRP4, A...	ATP-binding cassette C4, multi...		Lus10011498 [exp]	44.7	0.8265

Compare expression of checked genes

Lus10004358 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.