Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G17540 179 / 1e-54 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040155 [exp] 443 / 3e-158 AT4G17540 212 / 4e-67 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G082200 [exp] 250 / 5e-82 AT4G17540 203 / 1e-63 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10004359 pacid=23151917 polypeptide=Lus10004359 locus=Lus10004359.g ID=Lus10004359.BGIv1.0 annot-version=v1.0 ATGGAAAGGGGGTTGTCGACAGCTGAGACTGGAACTATGGAGGTGAGCAATCCCAGCAGAAGAAACCCTTTTGGAGAAGGAGGGATGATTAAAATGGAGA ATCCGTTTGCTTTGAAAGTGGGTCAAGTATTTACTGGCTTTGGCATTGGTTGTGGGGTTGGCATCGGCCATGGCCGCCCCATAAATCTCGGTGCACTGCC GATGGTGAATCAACTTCTTAGTGCCACCAGAGGCGCCACTGATGCTTTTTCAGGTGTTACAAGACAAGTCAACAATGCATTAAGGAAGGTGGGAGCAAAC AGCATTCAGGTCGGGGTTGGTTGTGGAGTCGGTTTCGGCCATGGATTCGGAGTTGGTATTGCTGTAAAAGCTAGTGCGTTGCATAAAATTCAGGCCTGTT TATTGGAAGCAGCTACGAAAGTTGTGATGAAATTCGGAGGAGTTCCCAACATGTCAATTGTTCAAGGTGGCTTTCCAATCTCTTTTCCAGGTGCCACCGG TGTAGCTGGTGAACCGAATAGTCATGCTACGCAGCTGGGAATTCAAGGCATTCCTTCTAAGGATGTAGCTGATTCATCTTTTGCTAGAACTGAACATGTT CTCACCAGCTTTCTCCAGAATCCAATCCTCAAGCAAGAAGATGACCCTCCCCTCAAACAAGCGGCAGGACGTCTGCAGGCAGAAAACAGCATGCTTCAAA TGGTTCTGAAACACCAGCAGATCATTGAGGATCTCATGGAAGAGAACAAGAAGCTACGCCAAATACTCGTGGAAGACCTTAAAGTACCAGCAAGTAAAAT CCACTATACTTATTCCACCACAAGTCAGTCTCCCTGTTCAGATTGTTTTGATTGTCGAAGAAAACAAAGAAAAAGAAGATAA
AA sequence Show only first row Show all	>Lus10004359 pacid=23151917 polypeptide=Lus10004359 locus=Lus10004359.g ID=Lus10004359.BGIv1.0 annot-version=v1.0 MERGLSTAETGTMEVSNPSRRNPFGEGGMIKMENPFALKVGQVFTGFGIGCGVGIGHGRPINLGALPMVNQLLSATRGATDAFSGVTRQVNNALRKVGAN SIQVGVGCGVGFGHGFGVGIAVKASALHKIQACLLEAATKVVMKFGGVPNMSIVQGGFPISFPGATGVAGEPNSHATQLGIQGIPSKDVADSSFARTEHV LTSFLQNPILKQEDDPPLKQAAGRLQAENSMLQMVLKHQQIIEDLMEENKKLRQILVEDLKVPASKIHYTYSTTSQSPCSDCFDCRRKQRKRR

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G17540			unknown protein		Lus10004359 [exp]	0	1
AT1G23380	HD	KNAT6S, KNAT6L,...	KNOTTED1-like homeobox gene 6 ...		Lus10029125 [exp]	6.9	0.8419
AT5G47510			Sec14p-like phosphatidylinosit...		Lus10028938 [exp]	8.8	0.8689
AT2G28880		ADCS, EMB1997	embryo defective 1997, aminode...		Lus10041403 [exp]	14.5	0.8326
AT3G15800			Glycosyl hydrolase superfamily...		Lus10011482 [exp]	14.7	0.8510
AT5G20870			O-Glycosyl hydrolases family 1...		Lus10043075 [exp]	17.3	0.8537
AT2G34540			unknown protein		Lus10028123 [exp]	18.9	0.8426
AT1G26810		GALT1	galactosyltransferase1 (.1)		Lus10030467 [exp]	19.4	0.7783
AT4G00550		DGD2	digalactosyl diacylglycerol de...		Lus10009820 [exp]	19.8	0.8029
					Lus10033952 [exp]	20.7	0.8475
AT1G05610		APS2	ADP-glucose pyrophosphorylase ...		Lus10042456 [exp]	23.5	0.8473

Compare expression of checked genes

Lus10004359 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.