Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G02890 217 / 2e-67 HXXXD-type acyl-transferase family protein (.1) AT4G29250 75 / 2e-14 HXXXD-type acyl-transferase family protein (.1) AT3G23840 62 / 2e-10 HXXXD-type acyl-transferase family protein (.1) AT4G24510 60 / 1e-09 VC2, VC-2, CER2 ECERIFERUM 2, HXXXD-type acyl-transferase family protein (.1) AT4G13840 50 / 1e-06 HXXXD-type acyl-transferase family protein (.1) AT4G31910 48 / 7e-06 HXXXD-type acyl-transferase family protein (.1) AT2G19070 47 / 1e-05 SHT spermidine hydroxycinnamoyl transferase (.1) AT1G65450 47 / 2e-05 HXXXD-type acyl-transferase family protein (.1.2.3) AT1G78990 46 / 2e-05 HXXXD-type acyl-transferase family protein (.1) AT1G31490 45 / 4e-05 HXXXD-type acyl-transferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040156 [exp] 679 / 0 AT5G02890 213 / 6e-66 HXXXD-type acyl-transferase family protein (.1) Lus10011003 [exp] 355 / 7e-121 AT5G02890 213 / 5e-66 HXXXD-type acyl-transferase family protein (.1) Lus10000592 [exp] 354 / 2e-120 AT5G02890 217 / 1e-67 HXXXD-type acyl-transferase family protein (.1) Lus10028335 [exp] 74 / 5e-14 AT4G29250 365 / 1e-122 HXXXD-type acyl-transferase family protein (.1) Lus10041782 [exp] 62 / 2e-10 AT4G29250 348 / 8e-116 HXXXD-type acyl-transferase family protein (.1) Lus10028171 [exp] 58 / 7e-09 AT4G24510 289 / 8e-94 ECERIFERUM 2, HXXXD-type acyl-transferase family protein (.1) Lus10005361 [exp] 57 / 1e-08 AT3G26040 213 / 9e-64 HXXXD-type acyl-transferase family protein (.1) Lus10016638 [exp] 57 / 1e-08 AT4G13840 315 / 2e-103 HXXXD-type acyl-transferase family protein (.1) Lus10014695 [exp] 53 / 3e-07 AT3G26040 221 / 2e-66 HXXXD-type acyl-transferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G082100 [exp] 220 / 2e-68 AT5G02890 191 / 1e-57 HXXXD-type acyl-transferase family protein (.1) Potri.001G152500 [exp] 217 / 4e-67 AT5G02890 211 / 4e-65 HXXXD-type acyl-transferase family protein (.1) Potri.005G153600 [exp] 69 / 1e-12 AT4G24510 313 / 4e-103 ECERIFERUM 2, HXXXD-type acyl-transferase family protein (.1) Potri.018G032700 [exp] 65 / 2e-11 AT4G29250 437 / 5e-151 HXXXD-type acyl-transferase family protein (.1) Potri.001G319200 [exp] 58 / 4e-09 AT4G13840 356 / 6e-120 HXXXD-type acyl-transferase family protein (.1) Potri.005G230900 [exp] 57 / 8e-09 AT1G27620 607 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.002G032200 [exp] 57 / 9e-09 AT1G27620 614 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.006G036100 [exp] 54 / 1e-07 AT3G26040 250 / 2e-78 HXXXD-type acyl-transferase family protein (.1) Potri.017G029300 [exp] 52 / 5e-07 AT1G24430 252 / 3e-79 HXXXD-type acyl-transferase family protein (.1) Potri.010G054100 [exp] 50 / 1e-06 AT3G26040 397 / 1e-135 HXXXD-type acyl-transferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0149 [flax] [poplar] CoA-acyltrans PF02458 [flax] [poplar] Transferase Transferase family
Representative CDS sequence Show only first row Show all	>Lus10004360 pacid=23151907 polypeptide=Lus10004360 locus=Lus10004360.g ID=Lus10004360.BGIv1.0 annot-version=v1.0 ATGGAAAGCAACGCAATCCCCGTGCCGAAGCCACACCTCGAAGGAATCCTAACCGTGATGCCAATGGCGGTGACAGAACCCAGGAGGATCCGACACGTGT CCTACAGCGGCGGTGACGACGGCGGTTGTTCTGGGATACTGAAGGGATGCCTGAACATAGTACTGTATTATACCAGCTCGGGACCGGCTCAGGATTCCGG TTGGGTGGCCGCCGGCTGGATGAAGACGTCCCTTGCACGAGCGTTGTCGGAGCAGCCTCTGATTAGCGGAAGGGTGAGGAAAGGTGAAGTTGAAAAAACA GGGGATTGTGAGAAGCTGGAAGTTGTGCCGAACGATAGTGGAGCTCGGCTGCTGGAGGCTACGATGCCGGTGAGTTTGACGGAGTTTTTGGAGATGGATG ATAAGGTTAGAGCTGAGGCGGAGGCGGATTTGGTTTTCTGGAAGGAGATTGATGAGGTTACTCCCCAGTTTTCTCCCCTGTTCTACGTTCAGGTAACAAA TTTCAAGTGTGGTGGGTACTCAGTAGGAATCAGCTGCAGCCTTTTAGTAGCGGACCTTCTCATAACCGACAACTTCCTACAGCGATGGGCCCAAATTCAA CAGAACGTCGTCCCCAAATTCACAGCCGGCGCTGGCAGCGACGGCGTCAGGAGGGTGAAACAGCTCCCAATTTTCTACCTTCCGAATCTGAAACCGAACG GCTCATTCCCGCCCGAAGTGTTCAGCTCAACTCCGAGCAGAGGCCAAGCCCTGACCTTCCTGCTCAAATCCACACAGAACGACGCCGGACTTATCGCATC GCTCAACGAGGCGCAGAGGAAAGTGAAGGGGGGAATAATTCCGGATAAGTTTCGGGTGGTTGAAGTAGTCGTCGGGAAGGAAGAATCTCCGGCGGTGGGT GTCTTGGAAGTGAAGACGTGGAGGAAATCGGACGACGAAGCGACGGTAGGCGCGTGGGGTGATGATCGCGTGGGGAGGTGGGATGAATTAAGGATGGGGG AAGTTTGCTTCTATGAAGGGATGAAACCGGTTGGGTTGGCTCGTTGGGCCGGTTGGCCGAATGACGATGATGGGTTCTTGATGGCGTTTACCCACCCGAT TGACGGCGGCAGTGTTGTTCTCGTTGCCGTTCCAGGTGGCGAGAAGCGACAAATACGTTGA
AA sequence Show only first row Show all	>Lus10004360 pacid=23151907 polypeptide=Lus10004360 locus=Lus10004360.g ID=Lus10004360.BGIv1.0 annot-version=v1.0 MESNAIPVPKPHLEGILTVMPMAVTEPRRIRHVSYSGGDDGGCSGILKGCLNIVLYYTSSGPAQDSGWVAAGWMKTSLARALSEQPLISGRVRKGEVEKT GDCEKLEVVPNDSGARLLEATMPVSLTEFLEMDDKVRAEAEADLVFWKEIDEVTPQFSPLFYVQVTNFKCGGYSVGISCSLLVADLLITDNFLQRWAQIQ QNVVPKFTAGAGSDGVRRVKQLPIFYLPNLKPNGSFPPEVFSSTPSRGQALTFLLKSTQNDAGLIASLNEAQRKVKGGIIPDKFRVVEVVVGKEESPAVG VLEVKTWRKSDDEATVGAWGDDRVGRWDELRMGEVCFYEGMKPVGLARWAGWPNDDDGFLMAFTHPIDGGSVVLVAVPGGEKRQIR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G02890			HXXXD-type acyl-transferase fa...		Lus10004360 [exp]	0	1
AT3G61220		SDR1	short-chain dehydrogenase/redu...		Lus10006894 [exp]	2.0	0.8927
AT4G21445			unknown protein		Lus10018419 [exp]	2.8	0.8946
AT3G01550		ATPPT2	phosphoenolpyruvate (pep)/phos...		Lus10022257 [exp]	4.9	0.8803
AT3G47600	MYB	ATMYB94, AtMYBC...	myb domain protein 94 (.1)		Lus10008616 [exp]	5.9	0.8717
AT4G23160		CRK8	cysteine-rich RLK (RECEPTOR-li...		Lus10007634 [exp]	8.9	0.8582
AT2G23580		ATMES4, ABE4	ARABIDOPSIS THALIANA METHYL ES...		Lus10009205 [exp]	9.4	0.8712
AT3G15110			unknown protein		Lus10009195 [exp]	12.1	0.8879
AT1G24490		ALB4, ARTEMIS	ARABIDOPSIS THALIANA ENVELOPE ...		Lus10006454 [exp]	12.5	0.7846
AT4G01070		UGT72B1, GT72B1	UDP-GLUCOSE-DEPENDENT GLUCOSYL...		Lus10036967 [exp]	16.7	0.8593
AT4G02920			unknown protein		Lus10042685 [exp]	18.0	0.8703

Compare expression of checked genes

Lus10004360 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.