Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G47200 197 / 3e-65 AtRABD2b, AtRab1A ARABIDOPSIS RAB GTPASE HOMOLOG D2B, RAB GTPase homolog 1A (.1) AT1G02130 197 / 3e-65 ARA5, AtRABD2a, AtRab1B, Ara-5 ARABIDOPSIS THALIANA RAB D2A, ARABIDOPSIS THALIANA RESPONSIVE TO ABSCISIC ACID 1B, ARABIDOPSIS RAS 5, RAS 5 (.1) AT4G17530 195 / 2e-64 RAB1C, AtRab1C, AtRABD2c RAB GTPase homolog 1C (.1) AT3G11730 137 / 1e-41 ATFP8, AtRABD1 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG D1, Ras-related small GTP-binding family protein (.1) AT5G59840 100 / 6e-27 Ras-related small GTP-binding family protein (.1) AT3G46060 97 / 8e-26 ARA3, Ara-3, AtRABE1c, AtRab8A RAB GTPase homolog 8A (.1.2.3) AT5G03520 97 / 9e-26 ATRAB-E1D, AtRab8C, AtRABE1d ARABIDOPSIS RAB HOMOLOG E1D, RAB GTPase homolog 8C (.1.2) AT3G53610 96 / 3e-25 ATRAB8, AtRab8B, AtRABE1a RAB GTPase homolog 8 (.1.2.3) AT3G09900 95 / 7e-25 AtRABE1e, AtRab8E RAB GTPase homolog E1E (.1) AT4G17160 84 / 8e-21 AtRab2B, AtRABB1a RAB GTPase homolog B1A (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010999 [exp] 210 / 3e-70 AT5G47200 387 / 3e-139 ARABIDOPSIS RAB GTPASE HOMOLOG D2B, RAB GTPase homolog 1A (.1) Lus10000595 [exp] 208 / 2e-69 AT5G47200 387 / 3e-139 ARABIDOPSIS RAB GTPASE HOMOLOG D2B, RAB GTPase homolog 1A (.1) Lus10037608 [exp] 171 / 2e-55 AT1G02130 255 / 1e-87 ARABIDOPSIS THALIANA RAB D2A, ARABIDOPSIS THALIANA RESPONSIVE TO ABSCISIC ACID 1B, ARABIDOPSIS RAS 5, RAS 5 (.1) Lus10036442 [exp] 145 / 2e-44 AT3G11730 350 / 2e-124 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG D1, Ras-related small GTP-binding family protein (.1) Lus10041117 [exp] 142 / 1e-42 AT3G11730 302 / 3e-104 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG D1, Ras-related small GTP-binding family protein (.1) Lus10024423 [exp] 98 / 2e-26 AT3G46060 376 / 7e-135 RAB GTPase homolog 8A (.1.2.3) Lus10007698 [exp] 98 / 3e-26 AT3G46060 378 / 1e-135 RAB GTPase homolog 8A (.1.2.3) Lus10040856 [exp] 98 / 4e-26 AT3G46060 366 / 7e-131 RAB GTPase homolog 8A (.1.2.3) Lus10025309 [exp] 98 / 4e-26 AT3G46060 374 / 1e-133 RAB GTPase homolog 8A (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G081800 [exp] 209 / 5e-70 AT1G02130 391 / 9e-141 ARABIDOPSIS THALIANA RAB D2A, ARABIDOPSIS THALIANA RESPONSIVE TO ABSCISIC ACID 1B, ARABIDOPSIS RAS 5, RAS 5 (.1) Potri.001G080400 [exp] 207 / 3e-69 AT1G02130 387 / 2e-139 ARABIDOPSIS THALIANA RAB D2A, ARABIDOPSIS THALIANA RESPONSIVE TO ABSCISIC ACID 1B, ARABIDOPSIS RAS 5, RAS 5 (.1) Potri.001G152800 [exp] 206 / 1e-68 AT1G02130 382 / 2e-137 ARABIDOPSIS THALIANA RAB D2A, ARABIDOPSIS THALIANA RESPONSIVE TO ABSCISIC ACID 1B, ARABIDOPSIS RAS 5, RAS 5 (.1) Potri.002G138400 [exp] 201 / 9e-67 AT1G02130 393 / 1e-141 ARABIDOPSIS THALIANA RAB D2A, ARABIDOPSIS THALIANA RESPONSIVE TO ABSCISIC ACID 1B, ARABIDOPSIS RAS 5, RAS 5 (.1) Potri.014G049400 [exp] 196 / 6e-65 AT1G02130 390 / 2e-140 ARABIDOPSIS THALIANA RAB D2A, ARABIDOPSIS THALIANA RESPONSIVE TO ABSCISIC ACID 1B, ARABIDOPSIS RAS 5, RAS 5 (.1) Potri.003G004000 [exp] 145 / 1e-44 AT3G11730 359 / 2e-128 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG D1, Ras-related small GTP-binding family protein (.1) Potri.004G226600 [exp] 145 / 1e-44 AT3G11730 364 / 4e-130 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG D1, Ras-related small GTP-binding family protein (.1) Potri.009G027900 [exp] 99 / 1e-26 AT3G46060 341 / 8e-121 RAB GTPase homolog 8A (.1.2.3) Potri.010G208900 [exp] 99 / 2e-26 AT3G46060 349 / 5e-124 RAB GTPase homolog 8A (.1.2.3) Potri.008G051700 [exp] 99 / 3e-26 AT3G46060 329 / 7e-116 RAB GTPase homolog 8A (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00071 [flax] [poplar] Ras Ras family
Representative CDS sequence Show only first row Show all	>Lus10004361 pacid=23151927 polypeptide=Lus10004361 locus=Lus10004361.g ID=Lus10004361.BGIv1.0 annot-version=v1.0 ATGTTTCCCGGCCAGGTGGTCTATGATGTCACAGACCAAGAGAGTTTCAACAATGTCAAACAGTGGTTGAGTGAAATTGATCGCTACGCAAGTGAGAACG TGAACAAACTTCTAGTTGGGAACAAGAGTGACCTCACTGCCAACAAAGTTGTTTCATATGAAACTGCTAAGGAACCAGGATTTCTTGTTGTTTACTGTGT TGTTGAAGGAACTCTCTTACGGCCTCTTCAGGCATTTGCCGATGAAATTGGGATTCCCTTCATGGAGACGAGTGCCAAGAACGCTTCCAATGTCGAAGAT GCTTTTATGGCAATGTCAGCTGCAATCAAGACCAGGATGGCTAGCCAACCTGTGTCAGGCACTGCCAGACCTCCAACGGTGCAAATCCGCGGAGAACCAG TGAACCAGAAGTCAGGTTGCTGCTCTTCTTGA
AA sequence Show only first row Show all	>Lus10004361 pacid=23151927 polypeptide=Lus10004361 locus=Lus10004361.g ID=Lus10004361.BGIv1.0 annot-version=v1.0 MFPGQVVYDVTDQESFNNVKQWLSEIDRYASENVNKLLVGNKSDLTANKVVSYETAKEPGFLVVYCVVEGTLLRPLQAFADEIGIPFMETSAKNASNVED AFMAMSAAIKTRMASQPVSGTARPPTVQIRGEPVNQKSGCCSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G47200		AtRABD2b, AtRab...	ARABIDOPSIS RAB GTPASE HOMOLOG...		Lus10004361 [exp]	0	1
AT4G18372			Small nuclear ribonucleoprotei...		Lus10042823 [exp]	9.4	0.7726
AT5G22060		ATJ2	ARABIDOPSIS THALIANA DNAJ HOMO...		Lus10008652 [exp]	12.7	0.7568
AT3G48090		ATEDS1, EDS1	enhanced disease susceptibilit...		Lus10036644 [exp]	14.1	0.7742
AT1G27350			Ribosome associated membrane p...		Lus10037031 [exp]	14.8	0.7478
AT1G36980			unknown protein		Lus10037355 [exp]	16.6	0.7754
AT4G13530			unknown protein		Lus10041074 [exp]	16.8	0.7742
AT1G79660			unknown protein		Lus10041631 [exp]	18.7	0.7205
AT2G44610		RAB6, AtRABH1b,...	Ras-related small GTP-binding ...		Lus10019502 [exp]	25.0	0.7050
AT2G26070		RTE1	REVERSION-TO-ETHYLENE SENSITIV...		Lus10035322 [exp]	26.3	0.7489
AT3G08890			Protein of unknown function, D...		Lus10012232 [exp]	29.8	0.7645

Compare expression of checked genes

Lus10004361 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.