Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G16830 98 / 2e-23 Hyaluronan / mRNA binding family (.1.2.3) AT4G17520 76 / 3e-15 Hyaluronan / mRNA binding family (.1) AT5G47210 57 / 5e-09 Hyaluronan / mRNA binding family (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040157 [exp] 305 / 1e-101 AT4G17520 181 / 1e-53 Hyaluronan / mRNA binding family (.1) Lus10000599 [exp] 104 / 2e-26 AT4G17520 170 / 7e-52 Hyaluronan / mRNA binding family (.1) Lus10020479 [exp] 61 / 6e-12 ND 33 / 0.005
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G081600 [exp] 126 / 4e-33 AT4G17520 180 / 2e-53 Hyaluronan / mRNA binding family (.1) Potri.001G153000 [exp] 119 / 3e-30 AT4G17520 128 / 1e-33 Hyaluronan / mRNA binding family (.1) Potri.014G049300 [exp] 110 / 3e-27 AT4G16830 159 / 2e-46 Hyaluronan / mRNA binding family (.1.2.3) Potri.002G138300 [exp] 108 / 1e-26 AT4G17520 133 / 1e-35 Hyaluronan / mRNA binding family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04774 [flax] [poplar] HABP4_PAI-RBP1 Hyaluronan / mRNA binding family
Representative CDS sequence Show only first row Show all	>Lus10004362 pacid=23151931 polypeptide=Lus10004362 locus=Lus10004362.g ID=Lus10004362.BGIv1.0 annot-version=v1.0 ATGACCACCATGAACCCTTTCGATCTCCTCGACGGTGTCGATAACGAGGACACCGCTGCGCTCCTCGCCGCCGCTCAGCTCAAGATTGAGAAGGAAAAAG AAAAGCCAAAGGCCGCCGCCGCCGTTCCTCCTCCTCTCAACAAGCTGGCACAGCAGAAGGCCGATATGGAAAAGAAGCCAGCTGGGAGAGATAACAAATA TGAAGGTCCTGGACGTGAAGGTGGACGTCGAGGAGGCCGTGGTGGCGGTGAAGGACGAGGCTATGGCCGTGGCCGAGGTGGTGGTCGTTTCGGAGGTTCC AATAACAATGAGGCTGGGTTTGGTAATAGCAATGGCTATGTGTACAAGCCATCTGAAGAGGGCGGTGAATCTCGGAGGCCGTCCGAGAGGCGCAGCAACT ATGGTGGGCCTCGTGACGGGAACTACCGTGGAGGTCGCCGTGGTGAGGAAGCTGGAGAAGGCGGTGAGCGTCATAAGAGGGTGTATGATCGACACAGCGG TAGTGGACGTGGGAATGACATTAAGCGTGATGGATCTGGCTCTGGTAACTGGGGGAGCCCTACTGAAGTTGCCCCAGACACTGTGGAACCTAATGCTGAG AATGAAGCAAATGTCACCTATGAAAAGAAACCTAAGGAGGAAGATGCTGATGATGCCAACAAGGATATTGCCAAGGATGAGGAGAAAGAGGAGGAAAAGG AGATGACACTGGTTGAGTGGGAGAAGTTTCGCGCTGAGCAAGGGAAGACTTCTGTTGTTTTGAAGACTACTGAGCAAAGGAAGGTTGATGCCAAGGAATT TGCATCCATGCAACAGATATCCAGTAAGAAGGAAAATGATGAAATCTTTGCCAAACTGGGTTCTGACAAGGATAAGAAGAAGGAAGCTGCTGATAAAGAA GAGAAGGCCAGGAAGGCTGTGAGCATAAATGAGTTCCTGAAACCAGCTGAAGGCGAGTCCTACAGAGGAGGTCGTGGTAGGGGAGGCCGTGGTGGACGTG GAGGCGGCAGAGGAGCAGGGTCTGGCGGAGGAGGCTACAACCGCAATGTGTCGGCTCCATCCATCGAAGACCCGGGGCAGTTCCCCTCGTTGGGTGGCAA GTGA
AA sequence Show only first row Show all	>Lus10004362 pacid=23151931 polypeptide=Lus10004362 locus=Lus10004362.g ID=Lus10004362.BGIv1.0 annot-version=v1.0 MTTMNPFDLLDGVDNEDTAALLAAAQLKIEKEKEKPKAAAAVPPPLNKLAQQKADMEKKPAGRDNKYEGPGREGGRRGGRGGGEGRGYGRGRGGGRFGGS NNNEAGFGNSNGYVYKPSEEGGESRRPSERRSNYGGPRDGNYRGGRRGEEAGEGGERHKRVYDRHSGSGRGNDIKRDGSGSGNWGSPTEVAPDTVEPNAE NEANVTYEKKPKEEDADDANKDIAKDEEKEEEKEMTLVEWEKFRAEQGKTSVVLKTTEQRKVDAKEFASMQQISSKKENDEIFAKLGSDKDKKKEAADKE EKARKAVSINEFLKPAEGESYRGGRGRGGRGGRGGGRGAGSGGGGYNRNVSAPSIEDPGQFPSLGGK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G17520			Hyaluronan / mRNA binding fami...		Lus10004362 [exp]	0	1
AT4G31580		SRZ22, RSZP22, ...	RS-containing zinc finger prot...		Lus10030631 [exp]	1.0	0.8235
AT1G18850			unknown protein		Lus10023616 [exp]	2.4	0.8005
AT1G64350		SEH1H	Transducin/WD40 repeat-like su...		Lus10001904 [exp]	9.0	0.7941
AT5G65260			RNA-binding (RRM/RBD/RNP motif...		Lus10043008 [exp]	10.7	0.7101
AT1G76010			Alba DNA/RNA-binding protein (...		Lus10021844 [exp]	11.5	0.7830
AT5G23740		RPS11-BETA	ribosomal protein S11-beta (.1...		Lus10005348 [exp]	14.6	0.7906
AT3G44620			protein tyrosine phosphatases;...		Lus10019533 [exp]	16.5	0.7777
AT5G18380			Ribosomal protein S5 domain 2-...		Lus10012599 [exp]	17.6	0.7832
AT4G17520			Hyaluronan / mRNA binding fami...		Lus10040157 [exp]	18.8	0.6954
AT3G13230			RNA-binding KH domain-containi...		Lus10027099 [exp]	20.3	0.7220

Compare expression of checked genes

Lus10004362 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.