Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G16820 556 / 0 PLA-I{beta]2 phospholipase A I beta 2, alpha/beta-Hydrolases superfamily protein (.1) AT2G44810 311 / 5e-102 DAD1 DEFECTIVE ANTHER DEHISCENCE 1, alpha/beta-Hydrolases superfamily protein (.1) AT1G30370 254 / 4e-78 DLAH DAD1-like acylhydrolase, alpha/beta-Hydrolases superfamily protein (.1) AT1G51440 236 / 3e-71 alpha/beta-Hydrolases superfamily protein (.1) AT2G30550 228 / 9e-69 alpha/beta-Hydrolases superfamily protein (.1.2) AT1G06800 219 / 2e-65 PLA-I{gamma}1 phospholipase A I gamma 1, alpha/beta-Hydrolases superfamily protein (.1.2) AT4G18550 198 / 5e-58 AtDSEL Arabidopsis thaliana DAD1-like seeding establishment-related lipase, alpha/beta-Hydrolases superfamily protein (.1) AT2G31690 190 / 3e-54 alpha/beta-Hydrolases superfamily protein (.1) AT1G06250 182 / 5e-52 alpha/beta-Hydrolases superfamily protein (.1) AT1G05800 183 / 9e-52 DGL DONGLE, alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040158 [exp] 962 / 0 AT4G16820 573 / 0.0 phospholipase A I beta 2, alpha/beta-Hydrolases superfamily protein (.1) Lus10010997 [exp] 754 / 0 AT4G16820 551 / 0.0 phospholipase A I beta 2, alpha/beta-Hydrolases superfamily protein (.1) Lus10000600 [exp] 417 / 4e-145 AT4G16820 304 / 4e-101 phospholipase A I beta 2, alpha/beta-Hydrolases superfamily protein (.1) Lus10042914 [exp] 310 / 1e-100 AT2G44810 464 / 1e-163 DEFECTIVE ANTHER DEHISCENCE 1, alpha/beta-Hydrolases superfamily protein (.1) Lus10041165 [exp] 286 / 1e-91 AT2G44810 464 / 4e-164 DEFECTIVE ANTHER DEHISCENCE 1, alpha/beta-Hydrolases superfamily protein (.1) Lus10015521 [exp] 251 / 8e-78 AT1G30370 524 / 0.0 DAD1-like acylhydrolase, alpha/beta-Hydrolases superfamily protein (.1) Lus10038524 [exp] 248 / 7e-77 AT1G30370 526 / 0.0 DAD1-like acylhydrolase, alpha/beta-Hydrolases superfamily protein (.1) Lus10038526 [exp] 248 / 2e-75 AT1G30370 539 / 0.0 DAD1-like acylhydrolase, alpha/beta-Hydrolases superfamily protein (.1) Lus10023280 [exp] 224 / 3e-66 AT1G30370 537 / 0.0 DAD1-like acylhydrolase, alpha/beta-Hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G153100 [exp] 729 / 0 AT4G16820 575 / 0.0 phospholipase A I beta 2, alpha/beta-Hydrolases superfamily protein (.1) Potri.003G081500 [exp] 719 / 0 AT4G16820 558 / 0.0 phospholipase A I beta 2, alpha/beta-Hydrolases superfamily protein (.1) Potri.014G047700 [exp] 311 / 7e-101 AT2G44810 491 / 9e-174 DEFECTIVE ANTHER DEHISCENCE 1, alpha/beta-Hydrolases superfamily protein (.1) Potri.014G047900 [exp] 287 / 9e-92 AT2G44810 557 / 0.0 DEFECTIVE ANTHER DEHISCENCE 1, alpha/beta-Hydrolases superfamily protein (.1) Potri.002G137900 [exp] 283 / 4e-90 AT2G44810 543 / 0.0 DEFECTIVE ANTHER DEHISCENCE 1, alpha/beta-Hydrolases superfamily protein (.1) Potri.009G057900 [exp] 254 / 4e-78 AT1G30370 626 / 0.0 DAD1-like acylhydrolase, alpha/beta-Hydrolases superfamily protein (.1) Potri.001G263200 [exp] 253 / 2e-77 AT1G30370 607 / 0.0 DAD1-like acylhydrolase, alpha/beta-Hydrolases superfamily protein (.1) Potri.009G051900 [exp] 243 / 6e-74 AT1G51440 700 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.005G218500 [exp] 234 / 2e-70 AT1G06800 652 / 0.0 phospholipase A I gamma 1, alpha/beta-Hydrolases superfamily protein (.1.2) Potri.002G044700 [exp] 228 / 4e-68 AT1G06800 662 / 0.0 phospholipase A I gamma 1, alpha/beta-Hydrolases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF01764 [flax] [poplar] Lipase_3 Lipase (class 3)
Representative CDS sequence Show only first row Show all	>Lus10004364 pacid=23151935 polypeptide=Lus10004364 locus=Lus10004364.g ID=Lus10004364.BGIv1.0 annot-version=v1.0 ATGCAGATCGGTCTCGGATCCGCAGCGCCGGCGCAAAACCTCCACCTCTTCCAGGCGAAACGCGCCGGCAGCAGCTTCAAGTACAGCCAATCTCCCCTCA ATCCCATCATTTCTTGCTCTTCTTCTTCTTCGTCAACTATCCCCAGCCACATCGCCAATCTCAACAAGCTTCTCCAGAAGCAGGCTGCTCCGGAGCTCAA TTCAAGATCCAACCGCATCGAATCAATTCCTAATGTTCCCAAACCTAAAAAGGCGCCTTCGTCGACTAACAGGGGAAGTTATTTACTCGAGGGGCTTAAT TTGGCCAGGATCTGGCCGGAGATGAAGGCGGCTGATGAGATGTCGCCTAGGCATCTCAACCGGTTGCAGCGGCTGCTATCCAAGACGGCGGAGTATTCTC CCAGGAATAGTTTAGCTTCGCGGTGGAGGGAATACCACGGCCTCAACGATTGGAAAGGTATGTTAGATCCTCTTGATGAGAATCTCCGGCGAGAGGTGGT TAGGTACGGGGAGTTCGTTCAGGCGGCGTATCACGCCTTCCATTCAGATCCGGAATTTTCGGCCGCGGAGGCATCGCTCCCAAGACAGGTGGCGCTCTCT GACAGGACTTTCAAGGTCACCAAGAGCCTTTACGCCACGTCATCGGTCGGCTTGCCTAAGTGGGTCGACGAAGTGGCTCCTGATCTCGGGTGGATGACCC AGCGGACCAGCTGGGTCGGGTATGTTGCCGTCTGCGATGACAAGAGAGAGATCCAGCGGATGGGGAGGAGAGACATCGTCATCGCCTTACGTGGCACTTC CACTTGTTTAGAATGGGCCGAAAACATGAGGGCCCAATTAGTTTCAATGTCCGATGAATCCAAATCAGCCCAAAATAATCCCAAGGTCGAATGTGGGTTC CTAAGCCTGTACAAAACGAAAGGAGCCCACGTTCCCAGCCTAGCCCAATCCGTCGTCGACGAGGTAAAGAGACTAATGGAACAATACAAAGGTGAAACCT TAAGCATAACGGTGACCGGACACAGCCTAGGAGCGGCTCTGTCTTTGCTAGTCGCCGACGAGCTGAGCACGTGCTCCCCAGACATGCCTCCCGTCGCAGT TTTTTCGTTCGGCGGGCCGCGTGTCGGGAATCGAGCATTCGGGAGACGGTTGAACAACAAGAAAGTAAAAGTTTTGAGGGTAGTAAATAACCAAGACTTG ATCACTAAAGTTCCAGGGTTGCCGATGGTGGAGGACGAGAATCACCCGTTGGCGTACTCACACGTGGGGACCGAGTTACGGGTAGACACGAGGATGTCCC CATACTTGAAGCCAAACGCAGACGTGGCGTGCTGCCATGACCTGGAGGCTTACCTGCACCTAGTGGATGGGTTCTTGGCGTCGAACTGTCCGTTTAGGTC CAATGCGAAGAGGAGTTTAGTGAAGTTGTTGAACGAGCAAAAGTCGAATGTAAAACAATTGTATACGAGTAAGGCGCAAGCCTTGACGTTGAAATTTGAA AGGCAGCAAGGAGGGCTTGGCTCAGCTACTGGCTGTTTGCCTAGTCCTTCTTCTTCGACCTAG
AA sequence Show only first row Show all	>Lus10004364 pacid=23151935 polypeptide=Lus10004364 locus=Lus10004364.g ID=Lus10004364.BGIv1.0 annot-version=v1.0 MQIGLGSAAPAQNLHLFQAKRAGSSFKYSQSPLNPIISCSSSSSSTIPSHIANLNKLLQKQAAPELNSRSNRIESIPNVPKPKKAPSSTNRGSYLLEGLN LARIWPEMKAADEMSPRHLNRLQRLLSKTAEYSPRNSLASRWREYHGLNDWKGMLDPLDENLRREVVRYGEFVQAAYHAFHSDPEFSAAEASLPRQVALS DRTFKVTKSLYATSSVGLPKWVDEVAPDLGWMTQRTSWVGYVAVCDDKREIQRMGRRDIVIALRGTSTCLEWAENMRAQLVSMSDESKSAQNNPKVECGF LSLYKTKGAHVPSLAQSVVDEVKRLMEQYKGETLSITVTGHSLGAALSLLVADELSTCSPDMPPVAVFSFGGPRVGNRAFGRRLNNKKVKVLRVVNNQDL ITKVPGLPMVEDENHPLAYSHVGTELRVDTRMSPYLKPNADVACCHDLEAYLHLVDGFLASNCPFRSNAKRSLVKLLNEQKSNVKQLYTSKAQALTLKFE RQQGGLGSATGCLPSPSSST

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G16820		PLA-I{beta]2	phospholipase A I beta 2, alph...		Lus10004364 [exp]	0	1
AT4G16820		PLA-I{beta]2	phospholipase A I beta 2, alph...		Lus10040158 [exp]	1.7	0.9380
AT3G57450			unknown protein		Lus10029496 [exp]	2.6	0.9521
AT2G46690			SAUR-like auxin-responsive pro...		Lus10010110 [exp]	5.3	0.9332
AT1G18740			Protein of unknown function (D...		Lus10018883 [exp]	5.7	0.9210
AT3G06260		GolS9, GATL4	galactinol synthase 9, galactu...		Lus10034012 [exp]	8.5	0.9417
AT4G14740			Plant protein of unknown funct...		Lus10041187 [exp]	10.9	0.9231
					Lus10031606 [exp]	10.9	0.8924
AT1G18740			Protein of unknown function (D...		Lus10028578 [exp]	16.6	0.8999
AT5G17850			Sodium/calcium exchanger famil...		Lus10005673 [exp]	20.1	0.9061
AT5G61660			glycine-rich protein (.1)		Lus10032507 [exp]	20.8	0.8406

Compare expression of checked genes

Lus10004364 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.