Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G60900 535 / 1e-179 RLK1 receptor-like protein kinase 1 (.1) AT1G34300 322 / 1e-97 lectin protein kinase family protein (.1) AT4G32300 308 / 2e-92 SD2-5 S-domain-2 5 (.1) AT2G19130 306 / 2e-91 S-locus lectin protein kinase family protein (.1) AT4G00340 297 / 3e-88 RLK4 receptor-like protein kinase 4 (.1) AT4G21380 293 / 2e-86 ARK3 receptor kinase 3 (.1) AT1G11280 290 / 8e-86 S-locus lectin protein kinase family protein (.1.2.3.4) AT1G65800 276 / 2e-80 ARK2 receptor kinase 2 (.1) AT5G24080 265 / 8e-80 Protein kinase superfamily protein (.1) AT4G21390 272 / 6e-79 B120 S-locus lectin protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040160 [exp] 1055 / 0 AT5G60900 267 / 1e-88 receptor-like protein kinase 1 (.1) Lus10010992 [exp] 982 / 0 AT5G60900 540 / 0.0 receptor-like protein kinase 1 (.1) Lus10031231 [exp] 642 / 0 AT5G60900 536 / 2e-180 receptor-like protein kinase 1 (.1) Lus10031230 [exp] 639 / 0 AT5G60900 388 / 4e-123 receptor-like protein kinase 1 (.1) Lus10031805 [exp] 638 / 0 AT5G60900 530 / 5e-178 receptor-like protein kinase 1 (.1) Lus10024195 [exp] 631 / 0 AT5G60900 367 / 3e-114 receptor-like protein kinase 1 (.1) Lus10042940 [exp] 450 / 7e-146 AT5G60900 381 / 1e-120 receptor-like protein kinase 1 (.1) Lus10036639 [exp] 442 / 7e-143 AT5G60900 394 / 1e-125 receptor-like protein kinase 1 (.1) Lus10030400 [exp] 363 / 5e-117 AT5G60900 356 / 1e-115 receptor-like protein kinase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G153800 [exp] 976 / 0 AT5G60900 545 / 0.0 receptor-like protein kinase 1 (.1) Potri.003G212000 [exp] 729 / 0 AT5G60900 655 / 0.0 receptor-like protein kinase 1 (.1) Potri.T084500 [exp] 728 / 0 AT5G60900 653 / 0.0 receptor-like protein kinase 1 (.1) Potri.T084300 [exp] 710 / 0 AT5G60900 645 / 0.0 receptor-like protein kinase 1 (.1) Potri.T084401 [exp] 709 / 0 AT5G60900 641 / 0.0 receptor-like protein kinase 1 (.1) Potri.001G014600 [exp] 692 / 0 AT5G60900 666 / 0.0 receptor-like protein kinase 1 (.1) Potri.001G014100 [exp] 692 / 0 AT5G60900 669 / 0.0 receptor-like protein kinase 1 (.1) Potri.001G228200 [exp] 682 / 0 AT5G60900 601 / 0.0 receptor-like protein kinase 1 (.1) Potri.T085100 [exp] 660 / 0 AT5G60900 554 / 0.0 receptor-like protein kinase 1 (.1) Potri.001G014700 [exp] 645 / 0 AT5G60900 575 / 0.0 receptor-like protein kinase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0016 [flax] [poplar] PF01453 [flax] [poplar] B_lectin D-mannose binding lectin
Representative CDS sequence Show only first row Show all	>Lus10004365 pacid=23151912 polypeptide=Lus10004365 locus=Lus10004365.g ID=Lus10004365.BGIv1.0 annot-version=v1.0 ATGGCATCTTCTTCTCTTCTTATGCTACTTTCCTTCGTCTGGTTTTCTATCCTAAACCCTCATTTCTCAACAGCAAATGTGACTTTGAGTTCATCACTAA CAGCTGATCAGAACACCAACTCCGCATGGGATTCACCTTCAGGAGACTTCGCTTTCGGGTTTAGCCAACTCAAGACAAACTCAGACCTCTTCTTGCTAGC CATCTGGTTCAACAAGATCCCCAGCAGAACAATCGTCTGGTTTGCCAATGGCGACAACCCAGTTCCCAAGGGATCGAAAGTCGAGCTTACCTCCAGCAGT CTCGCATTAACTGATCCTGGAGGCCGACTGGTATGGGAAGCAAAACCTGTTGGTACTGGTATAAGTACCATATCATATGCTGCCTTATTGGATACTGGCA ATTTTGTACTTGTAAGTAACATTACTTCTGAGTTCCTCTGGCAAAGTTTTAGCAATCCTACTGATACCTTACTGCCAAACCAAACTTTGAGCTTGGGAAC AACTATGTTCGCTAAGCGAACCGAAAAAAACTACACAAAGGGAAGGTTTGCTCTTAGATTCTCCAATGGAAGTCTTGACCTTGTCCCGGTAGCTTGGCCA GGTGGTTCTTTCTATAACCGTTACTACACCAGTGGTACTTATAGCTCGAATCCTTCCGAGGCAGGCAACCGTCTGGTTTTCAATGCATCCGCACAGGTTT ATATAGTGAAAGGGAATGGAGACATTGCTCAGCTTCTTACTTGGGACTTTGTGACTTATAGACAGGATTCATACTATAGAGTAACATTGGGGTTTGATGG TCTTTTCACACAATACTCTCATCCAAAGAATTTTAATGCTGGTGATAACCCTTCTTGGCTGCCTGTTCAAACTGTTCCTACTAACCTTTGCACAGCATTT TTCCATACGCTTAGTGGCGGTCCTTGTGGATACAATAGCTACTGTGCATATCAGGACTCCAACCCTACTTGTAGCTGTCCTCCAGGGTATGTGATTGCGA ATTCGGAAGATCCATTGGATGGATGCATACCGACTTACCCTCAGGGATGTGGATTAGGCGACGATGATTCAAAGGATCCAAAGATGGTTTATGAGTTCAG GAAGGTGAATGGGGTGGATTTCCCTTTGAATGACTATGAAAGGCTGCAACTTGACAGTGAATCGGACTGTGAAGACTCTTGCTTGAATGACTGTGCATGT GCTGTTGCAGTGTTTGATGGACTTAGGTGTTGGAAAAAGAGGCTTCCACTCTCCAATGGAAGAACTTGGAACAATACATTGATAAGGCTTATGTTCAAAG TAAGAAAGGGAGATAATGTTCCTACTTCTTCTTCAGGGTTTCCTGAACTTGGGAAGAGGAAACAAACACCAGTTGCATTGAAGGCATCTCTTGGGAGTTC TGTAGCCCTTAATGGAATCCTGGTTTTTTTTGCTTCTTTGGTTTTGTTAAGAATCAGGAAGAGGAAAATGGAAAACGGTAGAGATTTCCATAACTTGGGG AGCACGGTACTGGAGACAAGTATGCGTTCCTTCAGCTACAAGGAAGTCGAAGCAGCCACAGATGGATTCAAGGAAGAGCTAGGGAGAGGCTCTTTCGGGA TTGTGTACAAAGGCGTAATGAAACCTGGCAATGCAGCAATTGCAGTGAAGAAGCTGGACAAGCTGGCTCAAGAGAGGGAGAAGGAGTTCAAGACTGAGGT GAATGCAATCGGCAGAACACATCACAAGAACCTAGTGAGGTTGTACGGATACTGTGAAGAATCCTCCCACCGCCTTTTGATCTACGAGTTCATGAGCAAT GGCAGCCTTTCCAACTTCTTGTTTACCCTTCCAAGGCCGAATTGGCACCACAGGGTCATCATTGCGATGGGGATAGCAAGAGGGCTCGTGTACTTACACG AGGAATGCCCCGTACCAATCATCCATTGTGACATCAAGCCTCACAACATACTCCTCGACGATTCATTGACAGCTAGGATATCGGACTTTGGCCTGGCCAA GTTGCTGTTGTCCGACCAGACGAGGACCAAGACCATGATCCGAGGGACTAGAGGGTATGTGGCTCCGGAATGGTTCAAGAACGTGGCGATAACATCGAAA GTGGACGTGTATAGCTTTGGTGTGATGCTGCTTGAGATCATCTGCTGCAGAAAGAGTGTGGAGATTGGGTTAGAGGAAGGAGGTATTGAAGAAGAGAAGG TGGTATTGACAGAATGGGCTTATGAGTGCTTTAGTGGTGGGAGGATTGATGTTTTGGTGGGGAAGGAAGATGCAGCAGCCTTGGAAGATAAAGGGAGGTT GCAGAGGTGGGTGTTGATAGCAATGTGGTGTATTCAAGAGGATCCTTCAATTAGGCCAACGATGAAGAAGGTGATGGAGATGATGGAAGGTTATGTGGAT ATTCCTTTGTTGCCATTGCTTTCAACTTCTGATTCATTGGCTCTTGGATACAGCTTTGAAGGGAATTCAAACTGA
AA sequence Show only first row Show all	>Lus10004365 pacid=23151912 polypeptide=Lus10004365 locus=Lus10004365.g ID=Lus10004365.BGIv1.0 annot-version=v1.0 MASSSLLMLLSFVWFSILNPHFSTANVTLSSSLTADQNTNSAWDSPSGDFAFGFSQLKTNSDLFLLAIWFNKIPSRTIVWFANGDNPVPKGSKVELTSSS LALTDPGGRLVWEAKPVGTGISTISYAALLDTGNFVLVSNITSEFLWQSFSNPTDTLLPNQTLSLGTTMFAKRTEKNYTKGRFALRFSNGSLDLVPVAWP GGSFYNRYYTSGTYSSNPSEAGNRLVFNASAQVYIVKGNGDIAQLLTWDFVTYRQDSYYRVTLGFDGLFTQYSHPKNFNAGDNPSWLPVQTVPTNLCTAF FHTLSGGPCGYNSYCAYQDSNPTCSCPPGYVIANSEDPLDGCIPTYPQGCGLGDDDSKDPKMVYEFRKVNGVDFPLNDYERLQLDSESDCEDSCLNDCAC AVAVFDGLRCWKKRLPLSNGRTWNNTLIRLMFKVRKGDNVPTSSSGFPELGKRKQTPVALKASLGSSVALNGILVFFASLVLLRIRKRKMENGRDFHNLG STVLETSMRSFSYKEVEAATDGFKEELGRGSFGIVYKGVMKPGNAAIAVKKLDKLAQEREKEFKTEVNAIGRTHHKNLVRLYGYCEESSHRLLIYEFMSN GSLSNFLFTLPRPNWHHRVIIAMGIARGLVYLHEECPVPIIHCDIKPHNILLDDSLTARISDFGLAKLLLSDQTRTKTMIRGTRGYVAPEWFKNVAITSK VDVYSFGVMLLEIICCRKSVEIGLEEGGIEEEKVVLTEWAYECFSGGRIDVLVGKEDAAALEDKGRLQRWVLIAMWCIQEDPSIRPTMKKVMEMMEGYVD IPLLPLLSTSDSLALGYSFEGNSN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G60900		RLK1	receptor-like protein kinase 1...		Lus10004365 [exp]	0	1
AT3G22490			Seed maturation protein (.1)		Lus10015948 [exp]	3.6	0.7379
AT1G65440		GTB1	global transcription factor gr...		Lus10034231 [exp]	10.8	0.6748
AT1G24540		CYP86C1	"cytochrome P450, family 86, s...		Lus10036880 [exp]	14.4	0.6750
AT3G47110			Leucine-rich repeat protein ki...		Lus10030854 [exp]	15.3	0.6320
AT1G04260		PRA1.D, MPIP7, ...	PRENYLATED RAB ACCEPTOR 1.D, C...		Lus10042216 [exp]	26.2	0.6630
AT2G14540		ATSRP2	serpin 2 (.1)		Lus10009905 [exp]	26.7	0.6674
AT2G45120	C2H2ZnF		C2H2-like zinc finger protein ...		Lus10042872 [exp]	27.9	0.5906
AT4G13830		J20	DNAJ-like 20 (.1.2)		Lus10019668 [exp]	49.8	0.6400
AT1G55190		PRA7, PRA1.F2	PRENYLATED RAB ACCEPTOR 1.F2, ...		Lus10008598 [exp]	60.1	0.6394
AT1G02850		BGLU11	beta glucosidase 11 (.1.2.3.4....		Lus10007872 [exp]	73.8	0.6529

Compare expression of checked genes

Lus10004365 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.