Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G08180 200 / 1e-66 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (.1.2) AT4G12600 44 / 3e-06 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (.1.2) AT2G47610 45 / 4e-06 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (.1) AT4G22380 43 / 7e-06 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (.1) AT5G20160 43 / 8e-06 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (.1.2.3) AT3G62870 41 / 0.0001 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040161 [exp] 278 / 1e-97 AT5G08180 226 / 4e-77 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (.1.2) Lus10000421 [exp] 241 / 8e-83 AT5G08180 240 / 9e-83 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (.1.2) Lus10010993 [exp] 229 / 2e-78 AT5G08180 229 / 3e-78 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (.1.2) Lus10017031 [exp] 46 / 7e-07 AT4G22380 220 / 2e-75 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (.1) Lus10019420 [exp] 46 / 3e-06 AT5G55190 443 / 8e-159 RAN GTPase 3 (.1) Lus10043276 [exp] 46 / 3e-06 AT5G55190 428 / 9e-153 RAN GTPase 3 (.1) Lus10015295 [exp] 44 / 2e-05 AT4G22380 217 / 7e-72 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (.1) Lus10025435 [exp] 43 / 3e-05 AT4G22380 203 / 7e-66 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (.1) Lus10012463 [exp] 42 / 6e-05 AT3G62870 457 / 2e-165 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G110100 [exp] 220 / 9e-75 AT5G08180 225 / 8e-77 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (.1.2) Potri.019G087100 [exp] 49 / 7e-08 AT4G12600 213 / 9e-73 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (.1.2) Potri.013G116800 [exp] 47 / 5e-07 AT4G12600 216 / 3e-74 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (.1.2) Potri.004G113800 [exp] 42 / 4e-05 AT3G62870 399 / 5e-142 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (.1) Potri.017G100800 [exp] 42 / 5e-05 AT3G62870 377 / 1e-133 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (.1) Potri.017G101000 [exp] 42 / 5e-05 AT3G62870 376 / 3e-133 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (.1) Potri.001G326400 [exp] 41 / 0.0001 AT2G47610 385 / 1e-136 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (.1) Potri.004G113900 [exp] 41 / 0.0002 AT3G62870 362 / 7e-127 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0101 [flax] [poplar] PELOTA PF01248 [flax] [poplar] Ribosomal_L7Ae Ribosomal protein L7Ae/L30e/S12e/Gadd45 family
Representative CDS sequence Show only first row Show all	>Lus10004366 pacid=23151941 polypeptide=Lus10004366 locus=Lus10004366.g ID=Lus10004366.BGIv1.0 annot-version=v1.0 ATGGGCAGCGACGGTGAAAGTGACAAGTCGCAGAAGCGGGAGGAGAAGACGAAAAAGGCGATAACTCTTGCTCCAATCGCCAAGCCCCTCGCTGGGAAGA AGCTCTCCAAGAAAACTTTCAAGCTCGTCAAGAGAGCTGCTGAACACAAGTGCTTGAAACGAGGAGTGAAGGAGGTAGTTAAGAGCATTCGACGTGGTCA TAAAGGGATATGCATTATTGCTGGGAACATATCTCCCATTGATGTCATTACTCATGTTCCAATCTTGTGTGAAGAAGCTGAAATCCCATACTTTTATGTT TCTTCAAAAGAAGATCTTGCTACCGCAGGAAACACAAAAAGGCCAACTTGCTGTGTTCTGGTTCAAACTAAACCCCCCAAGGGAGAGATGCCTAAGGAGG AGCAAGAGAAGTTGCAGTCAGATTATGATCAAGTTGCAGCTGATGTCTCTGAACTCACCACCTCTCTATTCTGA
AA sequence Show only first row Show all	>Lus10004366 pacid=23151941 polypeptide=Lus10004366 locus=Lus10004366.g ID=Lus10004366.BGIv1.0 annot-version=v1.0 MGSDGESDKSQKREEKTKKAITLAPIAKPLAGKKLSKKTFKLVKRAAEHKCLKRGVKEVVKSIRRGHKGICIIAGNISPIDVITHVPILCEEAEIPYFYV SSKEDLATAGNTKRPTCCVLVQTKPPKGEMPKEEQEKLQSDYDQVAADVSELTTSLF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G08180			Ribosomal protein L7Ae/L30e/S1...		Lus10004366 [exp]	0	1
AT5G08180			Ribosomal protein L7Ae/L30e/S1...		Lus10040161 [exp]	1.0	0.9589
AT1G51060		HTA10	histone H2A 10 (.1)		Lus10032464 [exp]	4.7	0.9147
AT1G08580			unknown protein		Lus10040441 [exp]	5.8	0.8591
AT3G44750		HDT1, HDA3, ATH...	HISTONE DEACETYLASE 2A, histon...		Lus10003376 [exp]	6.9	0.8613
AT3G63240			DNAse I-like superfamily prote...		Lus10014684 [exp]	7.3	0.8570
AT3G20260			Protein of unknown function (D...		Lus10034809 [exp]	8.8	0.8994
AT4G21110			G10 family protein (.1)		Lus10014385 [exp]	9.5	0.8637
AT2G27590			S-adenosyl-L-methionine-depend...		Lus10004890 [exp]	11.2	0.8210
AT3G53730			Histone superfamily protein (....		Lus10005896 [exp]	11.5	0.8807
AT3G48710			DEK domain-containing chromati...		Lus10016746 [exp]	11.5	0.8698

Compare expression of checked genes

Lus10004366 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.