Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G02090 265 / 1e-89 ATCSN7, COP15, CSN7II, FUS5 FUSCA 5, CONSTITUTIVE PHOTOMORPHOGENIC 15, ARABIDOPSIS THALIANA COP9 SIGNALOSOME SUBUNIT 7, Proteasome component (PCI) domain protein (.1), Proteasome component (PCI) domain protein (.2), Proteasome component (PCI) domain protein (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040162 [exp] 401 / 4e-143 AT1G02090 244 / 1e-81 FUSCA 5, CONSTITUTIVE PHOTOMORPHOGENIC 15, ARABIDOPSIS THALIANA COP9 SIGNALOSOME SUBUNIT 7, Proteasome component (PCI) domain protein (.1), Proteasome component (PCI) domain protein (.2), Proteasome component (PCI) domain protein (.3) Lus10028205 [exp] 261 / 1e-87 AT1G02090 355 / 2e-125 FUSCA 5, CONSTITUTIVE PHOTOMORPHOGENIC 15, ARABIDOPSIS THALIANA COP9 SIGNALOSOME SUBUNIT 7, Proteasome component (PCI) domain protein (.1), Proteasome component (PCI) domain protein (.2), Proteasome component (PCI) domain protein (.3) Lus10042908 [exp] 246 / 5e-81 AT1G02090 385 / 7e-136 FUSCA 5, CONSTITUTIVE PHOTOMORPHOGENIC 15, ARABIDOPSIS THALIANA COP9 SIGNALOSOME SUBUNIT 7, Proteasome component (PCI) domain protein (.1), Proteasome component (PCI) domain protein (.2), Proteasome component (PCI) domain protein (.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G137400 [exp] 276 / 1e-93 AT1G02090 381 / 6e-135 FUSCA 5, CONSTITUTIVE PHOTOMORPHOGENIC 15, ARABIDOPSIS THALIANA COP9 SIGNALOSOME SUBUNIT 7, Proteasome component (PCI) domain protein (.1), Proteasome component (PCI) domain protein (.2), Proteasome component (PCI) domain protein (.3) Potri.014G047200 [exp] 268 / 3e-90 AT1G02090 394 / 5e-140 FUSCA 5, CONSTITUTIVE PHOTOMORPHOGENIC 15, ARABIDOPSIS THALIANA COP9 SIGNALOSOME SUBUNIT 7, Proteasome component (PCI) domain protein (.1), Proteasome component (PCI) domain protein (.2), Proteasome component (PCI) domain protein (.3) Potri.003G081066 [exp] 171 / 1e-53 AT1G02090 179 / 1e-57 FUSCA 5, CONSTITUTIVE PHOTOMORPHOGENIC 15, ARABIDOPSIS THALIANA COP9 SIGNALOSOME SUBUNIT 7, Proteasome component (PCI) domain protein (.1), Proteasome component (PCI) domain protein (.2), Proteasome component (PCI) domain protein (.3) Potri.001G153900 [exp] 100 / 5e-26 AT1G02090 87 / 1e-21 FUSCA 5, CONSTITUTIVE PHOTOMORPHOGENIC 15, ARABIDOPSIS THALIANA COP9 SIGNALOSOME SUBUNIT 7, Proteasome component (PCI) domain protein (.1), Proteasome component (PCI) domain protein (.2), Proteasome component (PCI) domain protein (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF01399 [flax] [poplar] PCI PCI domain
Representative CDS sequence Show only first row Show all	>Lus10004367 pacid=23151922 polypeptide=Lus10004367 locus=Lus10004367.g ID=Lus10004367.BGIv1.0 annot-version=v1.0 ATGGAGATTGAGCAGCAACAAGCTCCGTTCATCGAGAAGTTCGTGGAGCAAGCCTCTTCCGTCGTCGTCGACGGTTCTGCTCTCACGCGCATCGTCTTGG AATCCACCTCTCACCCTTCGGTTTTCGCCTTCTCCGAGATTTTGGCCGTCCCCAGTTTCGACAAGCTTCAAGGAACCGCGGATTCGGCATTCATCTATCT TCTTAAACTATTCGCTTATGGCACATGGCGGGACTACAAAGCTAAATCTAGCGAACTGCCACAGCTGACGCCAGATCAAATCATCAAACTGAAGCAACTT ACAGTGCTCACTCTTGCTGAGGGAACCAAGGTTATGTCCTATGATACGCTTTTGGAGGAACTTGAATTCTCTAACATCCGTGAACTTGAAGACTTCCTTA TTAATGAGTGTGTGTATGCTGGCATAATCAAAGGGAAGGTCAATCAATTAAGGAGATGCTTTGAGGTTCAATTTGCAGCTGGGAGGGACCTGATGCCTTG TGATTTTGACTCTGTAACAGAGACAACAAGAAATTGGCTGGAAACTTCGGGTAATATGCTAGCCCTGCTTGAAAAACAGATTGACAAGGCTAATGCGATG GAGGAATTGGAAAAGAAGCATGGCATGGATGTCAAGGTGCAGATTGAAAATGCGAAGAAGAATCTTAATTTCAGAGTCAGTATCTTTTCTCTATCGACTC TGCTTGTTACTATTATTAGTCAGTTTATGTGTTTGAGGCCTGCGCTTATCTGCAAAGATTACATATGTCTTTTCTCTCATCCTCAGTTAGTACAGTTATA TTGA
AA sequence Show only first row Show all	>Lus10004367 pacid=23151922 polypeptide=Lus10004367 locus=Lus10004367.g ID=Lus10004367.BGIv1.0 annot-version=v1.0 MEIEQQQAPFIEKFVEQASSVVVDGSALTRIVLESTSHPSVFAFSEILAVPSFDKLQGTADSAFIYLLKLFAYGTWRDYKAKSSELPQLTPDQIIKLKQL TVLTLAEGTKVMSYDTLLEELEFSNIRELEDFLINECVYAGIIKGKVNQLRRCFEVQFAAGRDLMPCDFDSVTETTRNWLETSGNMLALLEKQIDKANAM EELEKKHGMDVKVQIENAKKNLNFRVSIFSLSTLLVTIISQFMCLRPALICKDYICLFSHPQLVQLY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G02090		ATCSN7, COP15, ...	FUSCA 5, CONSTITUTIVE PHOTOMOR...		Lus10004367 [exp]	0	1
AT5G17310		AtUGP2, UGP2	UDP-glucose pyrophosphorylase ...		Lus10020788 [exp]	7.5	0.8716
AT1G70730		PGM2	phosphoglucomutase 2, Phosphog...		Lus10021777 [exp]	12.1	0.8735
AT1G55900		TIM50, EMB1860	embryo defective 1860, Haloaci...		Lus10043165 [exp]	20.6	0.8137
AT1G43800			Plant stearoyl-acyl-carrier-pr...		Lus10018926 [exp]	31.6	0.8706
AT5G04590		SIR	sulfite reductase (.1)		Lus10030131 [exp]	32.2	0.8657
AT5G39890			Protein of unknown function (D...		Lus10013620 [exp]	37.6	0.8565
AT2G26060		EMB1345	embryo defective 1345, Transdu...		Lus10017045 [exp]	38.7	0.8653
AT5G14060		CARAB-AK-LYS	Aspartate kinase family protei...		Lus10012568 [exp]	40.0	0.8647
AT1G14550			Peroxidase superfamily protein...		Lus10024207 [exp]	40.7	0.8600
AT2G39200		ATMLO12, MLO12	MILDEW RESISTANCE LOCUS O 12, ...		Lus10023506 [exp]	42.2	0.8542

Compare expression of checked genes

Lus10004367 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.