Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G47240 385 / 1e-129 ATNUDT8 nudix hydrolase homolog 8 (.1) AT5G47650 247 / 3e-77 ATNUDX2, ATNUDT2 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 2, nudix hydrolase homolog 2 (.1) AT4G25434 244 / 3e-76 ATNUDT10 nudix hydrolase homolog 10 (.1.2) AT2G04430 219 / 3e-66 ATNUDT5 nudix hydrolase homolog 5 (.1) AT4G12720 211 / 1e-63 ATNUDX7, GFG1, AtNUDT7, NUDT7 GROWTH FACTOR GENE 1, Arabidopsis thaliana Nudix hydrolase homolog 7, MutT/nudix family protein (.1.2.3.4) AT2G04450 196 / 8e-58 ATNUDX6, ATNUDT6 nucleoside diphosphates linked to some moiety X 6, Arabidopsis thaliana nucleoside diphosphate linked to some moiety X 6, nudix hydrolase homolog 6 (.1) AT3G19340 132 / 1e-32 Protein of unknown function (DUF3754) (.1) AT2G04440 112 / 5e-28 MutT/nudix family protein (.1) AT5G13940 99 / 2e-21 aminopeptidases (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040169 [exp] 594 / 0 AT5G47240 409 / 7e-143 nudix hydrolase homolog 8 (.1) Lus10012319 [exp] 244 / 6e-76 AT5G47650 310 / 4e-106 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 2, nudix hydrolase homolog 2 (.1) Lus10006365 [exp] 236 / 1e-72 AT4G12720 300 / 1e-101 GROWTH FACTOR GENE 1, Arabidopsis thaliana Nudix hydrolase homolog 7, MutT/nudix family protein (.1.2.3.4) Lus10038780 [exp] 230 / 1e-69 AT5G47650 345 / 1e-118 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 2, nudix hydrolase homolog 2 (.1) Lus10039079 [exp] 228 / 4e-69 AT5G47650 345 / 3e-119 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 2, nudix hydrolase homolog 2 (.1) Lus10006366 [exp] 221 / 3e-67 AT5G47650 281 / 4e-95 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 2, nudix hydrolase homolog 2 (.1) Lus10012320 [exp] 219 / 1e-66 AT5G47650 282 / 2e-95 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 2, nudix hydrolase homolog 2 (.1) Lus10035127 [exp] 158 / 1e-41 AT3G19340 749 / 0.0 Protein of unknown function (DUF3754) (.1) Lus10031975 [exp] 156 / 4e-41 AT3G19340 754 / 0.0 Protein of unknown function (DUF3754) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G154300 [exp] 421 / 3e-143 AT5G47240 416 / 2e-145 nudix hydrolase homolog 8 (.1) Potri.003G080400 [exp] 411 / 1e-139 AT5G47240 401 / 1e-139 nudix hydrolase homolog 8 (.1) Potri.018G069100 [exp] 318 / 1e-103 AT5G47240 316 / 3e-106 nudix hydrolase homolog 8 (.1) Potri.001G368000 [exp] 267 / 1e-84 AT5G47650 342 / 6e-119 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 2, nudix hydrolase homolog 2 (.1) Potri.016G006000 [exp] 247 / 2e-76 AT5G47650 352 / 3e-122 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 2, nudix hydrolase homolog 2 (.1) Potri.006G005400 [exp] 245 / 1e-75 AT5G47650 347 / 7e-120 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 2, nudix hydrolase homolog 2 (.1) Potri.005G077500 [exp] 239 / 2e-73 AT5G47650 322 / 2e-110 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 2, nudix hydrolase homolog 2 (.1) Potri.014G168400 [exp] 239 / 5e-73 AT5G47650 331 / 2e-113 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 2, nudix hydrolase homolog 2 (.1) Potri.003G106100 [exp] 235 / 1e-72 AT5G47650 332 / 9e-115 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 2, nudix hydrolase homolog 2 (.1) Potri.001G127700 [exp] 233 / 9e-72 AT5G47650 323 / 1e-111 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 2, nudix hydrolase homolog 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0261 [flax] [poplar] NUDIX PF00293 [flax] [poplar] NUDIX NUDIX domain
Representative CDS sequence Show only first row Show all	>Lus10004371 pacid=23151908 polypeptide=Lus10004371 locus=Lus10004371.g ID=Lus10004371.BGIv1.0 annot-version=v1.0 ATGCATGGATTTTCACTTGCTGGGGTAGATACCGATTATGTTTTGTGCGAGATACTCTTCATGAAGAAGAAGTTGCCATTGGTTGAACAAGTGGAGTTCT CGACTGCCACAAACCCTAATGCACTTTTTGGGCTAAAGAAGGATTCCCCCCTTCAAAGCTCTGTTGATGAAGCTGCTGCTAGTACATCACAATCATCAAC GCTAACGGTAACTGGCTCAGCAGATTTTCGTCCAGCAACATCACTTGGGGACTCTAGTGATGACATATCATTAGAGAATGGTGGATTGAGTTTTGGAAAC GGTAATCGTGTGACATCTTCCTCGTCTATATCATCGATGGCAGTAGCTTCTCCTTCTAGTATAGATGCTTGTTGTGATCAACTTAAAGATGGAAACAAGG GGTTTATTGATCTGCCTCTACATGAGTTTTGGGAAGATGATCAACTTCGAGTCCTTACAAGAAGTAGAGTGTACGATGTTATTAATCTACCCATGTTCGA TGAGAATGATACGGTGTGCAGCCAGCTAGAGTTTGACTACAGTCCTGAACTTGGAATGGCTGACTTCTGCTCCGACAGAGACGAGTTCCTGAAGCTCTGC AAGCGAGTTGAGTACACCATCCACGCTTGGTACCTTCTCCAGTTTGAAGATCTCATGGTGATGGCTAAGAGTAACTTCAAAATAGCAACTGATGAGGAGA TTGAAGTTGCCTTCTCAGGCCAGTATCTTTCTAATCTCCCTATCAAAGTTGACGAGTCTAAGCTTGACAAGAAACTCTTGATCAGTTATTTCGAGAATCA TCCTCATCCCCAACTTCCGGATTTCGCAAACAAGTTGATTCTACTGCTAGCAAAGCATCAAGATTACTGCATAACCCTGATGCTTCTGCCTCTCGGCTCC GTTCCTGTCTTTCCATTGGAGAACCAAGGGTTGGTTGCGGAAGTATCATGCAATCTTCCCACGAGGTCGGTCAGCAGTTCAGCTGCTGGGAGCGAGAAAT TTGTGCCTGCTGCCCCCCGAAGTTACTGTTTTGGTGATACTTGGAGTCATCTGTTAAAGAAGACTAGTGTGGAAGTTCTTGAAGCTTTAGACGATGAGTA TGGAGGGATTATAGTAGATCCCCACAGATTGCCACATAACTCTGATGCTTTTGCCTCCATGCTTCGTTCCTCTCTTTCCCATTGGAAAACCAAGGGGAAG AAGGGGATTTGGTTGAAGTTACCTTTGGAAAGGTCTCAGCTTGTTCCAATTGCAGTACAGGAGGGTTTCGAGTACCACCATGCTGAACCAGGATACGTGA TGCTAACCTACTGGATTCCTGAACAACCTTGCATGCTTCCTTCTAATGCTTCTCATCATGTTGGAGTTGGAGGGTTTGTCGTAAACGAGAACAATGAGAT TCTTGTAGTGCAGGAGAAGTTCTGTACTCCATCTTTCTCTGGAGTTTGGAAAATACCAACCGGTTTCATTCACGAGGCAGAGGAGATTTACTCTGGAGCA GTAAGAGAGGTCAAAGAGGAAACTGGGATCGACACCGAGTTCGTGGAAGTGATGGCATTCAGGCATGCTCATAACTTGGCATTTCAGAAATCAGACTTGT TCTTTGTGTGTATGCTGGAACCATTGTCAACACAGATCAGTATAGATGACTATGAGATTCAAGCAGCCAGGTGGATGCCTCTAGGAGATTTTCTGGAGCA GCCACTTATCAACGGAGACGGGATGTTCAAGAAGATCCTGGACATATGTATCGCTCGATTAGGGAAGCGTTACTGTGGACTATCGGCACATCAAGTTGTT TCCAAGTTTGACGACAGGCAATCCTGCCTCTACTACAATGTCGTCGACGCTCATAGTGGAAATAACGGCAACTGCATAGGTTATTGA
AA sequence Show only first row Show all	>Lus10004371 pacid=23151908 polypeptide=Lus10004371 locus=Lus10004371.g ID=Lus10004371.BGIv1.0 annot-version=v1.0 MHGFSLAGVDTDYVLCEILFMKKKLPLVEQVEFSTATNPNALFGLKKDSPLQSSVDEAAASTSQSSTLTVTGSADFRPATSLGDSSDDISLENGGLSFGN GNRVTSSSSISSMAVASPSSIDACCDQLKDGNKGFIDLPLHEFWEDDQLRVLTRSRVYDVINLPMFDENDTVCSQLEFDYSPELGMADFCSDRDEFLKLC KRVEYTIHAWYLLQFEDLMVMAKSNFKIATDEEIEVAFSGQYLSNLPIKVDESKLDKKLLISYFENHPHPQLPDFANKLILLLAKHQDYCITLMLLPLGS VPVFPLENQGLVAEVSCNLPTRSVSSSAAGSEKFVPAAPRSYCFGDTWSHLLKKTSVEVLEALDDEYGGIIVDPHRLPHNSDAFASMLRSSLSHWKTKGK KGIWLKLPLERSQLVPIAVQEGFEYHHAEPGYVMLTYWIPEQPCMLPSNASHHVGVGGFVVNENNEILVVQEKFCTPSFSGVWKIPTGFIHEAEEIYSGA VREVKEETGIDTEFVEVMAFRHAHNLAFQKSDLFFVCMLEPLSTQISIDDYEIQAARWMPLGDFLEQPLINGDGMFKKILDICIARLGKRYCGLSAHQVV SKFDDRQSCLYYNVVDAHSGNNGNCIGY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G47240		ATNUDT8	nudix hydrolase homolog 8 (.1)		Lus10004371 [exp]	0	1
AT2G34160			Alba DNA/RNA-binding protein (...		Lus10021222 [exp]	2.4	0.8247
AT5G47240		ATNUDT8	nudix hydrolase homolog 8 (.1)		Lus10040169 [exp]	5.0	0.8704
AT4G36470			S-adenosyl-L-methionine-depend...		Lus10041380 [exp]	5.1	0.7947
AT5G20190			Tetratricopeptide repeat (TPR)...		Lus10043266 [exp]	7.1	0.7984
AT5G20190			Tetratricopeptide repeat (TPR)...		Lus10019409 [exp]	10.4	0.8302
AT5G46590	NAC	ANAC096	NAC domain containing protein ...		Lus10010294 [exp]	14.1	0.7709
AT1G32220			NAD(P)-binding Rossmann-fold s...		Lus10010419 [exp]	18.7	0.8272
AT2G43040		NPG1	no pollen germination 1, tetra...		Lus10033595 [exp]	19.9	0.7460
AT3G50120			Plant protein of unknown funct...		Lus10019324 [exp]	24.1	0.7769
AT1G65910	NAC	ANAC028	NAC domain containing protein ...		Lus10010959 [exp]	25.5	0.7758

Compare expression of checked genes

Lus10004371 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.