Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G47310 244 / 1e-77 PPPDE putative thiol peptidase family protein (.1) AT4G17486 242 / 3e-77 PPPDE putative thiol peptidase family protein (.1.2) AT1G47740 220 / 6e-68 PPPDE putative thiol peptidase family protein (.1.2) AT2G25190 211 / 3e-65 PPPDE putative thiol peptidase family protein (.1) AT5G25170 207 / 4e-64 PPPDE putative thiol peptidase family protein (.1) AT1G80690 204 / 2e-62 PPPDE putative thiol peptidase family protein (.1) AT4G31980 207 / 3e-59 unknown protein AT4G25680 81 / 5e-17 PPPDE putative thiol peptidase family protein (.1) AT4G25660 80 / 9e-17 PPPDE putative thiol peptidase family protein (.1) AT3G07090 62 / 2e-10 PPPDE putative thiol peptidase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040170 [exp] 329 / 2e-111 AT4G17486 283 / 9e-98 PPPDE putative thiol peptidase family protein (.1.2) Lus10007844 [exp] 292 / 6e-97 AT4G17486 277 / 3e-95 PPPDE putative thiol peptidase family protein (.1.2) Lus10004755 [exp] 292 / 7e-97 AT4G17486 273 / 2e-93 PPPDE putative thiol peptidase family protein (.1.2) Lus10032708 [exp] 223 / 1e-69 AT1G47740 357 / 1e-125 PPPDE putative thiol peptidase family protein (.1.2) Lus10003951 [exp] 223 / 2e-69 AT1G47740 358 / 8e-126 PPPDE putative thiol peptidase family protein (.1.2) Lus10043293 [exp] 223 / 2e-69 AT4G17486 243 / 3e-81 PPPDE putative thiol peptidase family protein (.1.2) Lus10013657 [exp] 221 / 5e-69 AT4G17486 243 / 1e-81 PPPDE putative thiol peptidase family protein (.1.2) Lus10018326 [exp] 219 / 2e-68 AT5G25170 314 / 3e-110 PPPDE putative thiol peptidase family protein (.1) Lus10019437 [exp] 218 / 1e-67 AT4G17486 241 / 1e-80 PPPDE putative thiol peptidase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G080300 [exp] 266 / 1e-86 AT5G47310 295 / 9e-102 PPPDE putative thiol peptidase family protein (.1) Potri.001G154400 [exp] 258 / 2e-83 AT5G47310 308 / 4e-107 PPPDE putative thiol peptidase family protein (.1) Potri.002G134200 [exp] 223 / 8e-70 AT1G47740 346 / 3e-121 PPPDE putative thiol peptidase family protein (.1.2) Potri.014G042300 [exp] 220 / 2e-68 AT1G47740 339 / 2e-118 PPPDE putative thiol peptidase family protein (.1.2) Potri.006G261500 [exp] 217 / 2e-67 AT5G25170 313 / 5e-109 PPPDE putative thiol peptidase family protein (.1) Potri.006G154400 [exp] 216 / 3e-67 AT4G17486 220 / 8e-73 PPPDE putative thiol peptidase family protein (.1.2) Potri.T126004 [exp] 216 / 1e-66 AT1G47740 337 / 2e-117 PPPDE putative thiol peptidase family protein (.1.2) Potri.009G113168 [exp] 214 / 3e-66 AT1G47740 335 / 6e-117 PPPDE putative thiol peptidase family protein (.1.2) Potri.018G021700 [exp] 212 / 2e-65 AT5G25170 301 / 2e-104 PPPDE putative thiol peptidase family protein (.1) Potri.004G151200 [exp] 212 / 2e-65 AT1G47740 335 / 1e-116 PPPDE putative thiol peptidase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0125 [flax] [poplar] Peptidase_CA PF05903 [flax] [poplar] Peptidase_C97 PPPDE putative peptidase domain
Representative CDS sequence Show only first row Show all	>Lus10004372 pacid=23151925 polypeptide=Lus10004372 locus=Lus10004372.g ID=Lus10004372.BGIv1.0 annot-version=v1.0 ATGGATCAGAGGTCTCAATCAGGCATGGACATGATCAGTAGCCTCCCAGCTGAGATCCTAAAGTACCATATTCTCAACTTGCTCACCGTCAACGAGCAAG CCAGAACCAGCGTCCTATCCAAACAATGGAGATCCATATGGCTAAGCCTCATAATTCCATCCCCCACCTTTGCTCTACAAGTGTCGACGATGAACCCCAT AATCCAGTCCAGCATCGACAACATCATCGCCCGCCTGGCCTCGAGATCCGTCGAGGAACTGACCCTCGAGGCGGAGGACTACAACGTCTCTACGGGACTA TTCGCCCTCGTTGAGCTCGCCAAGTTGGTCCTCACCGGCTGCTGCCTGGTGCACGCTCCCCCGCCTTCGTTTCAAGGGTTTGCCAACCTTACTAGTGTTG GACTGTCCAATGTCCTACTCGAGGTTGACTTGAGCGACCTTGTCTCGACATGGTGCCCCGTGCTGACAACGCTGGAGGTTCATAGATGTGATTGTGTGGA TGCTCTAGTGGTTGATTCGAGGCGCCTCGAGATATTGGATATCACGTCTGATTTTCGATCCATTTGCTTTAGGAACGCCCCCGTTCTTAAATGGTTACGA GTCGAGACTGAGTCCGAGAGTCGGTTACCGAGTGGTCACATGAAGGGTTCGATGCGTTTCTTGAGGTTCAGGGAGACATTCGGCAACGTGCTGCCGACTT TGGAAGAAGTTTTGATGGGGTCCGCAGAGGGCCACTGTCTCGATTTCCTCCGTCTCCGATCCCAAGACCTAACATTCCATCTTCCTCCGGCCGACGGTTG TCTCCCTTCACCGCTCTCTCAATTTTTATTCAATATCGCATCCTTGTGTCATTTAGCGCTAGTCCAGCAACTCTCTCTGCTTCAGGCTCTTGAATTATTA CATTTCTTCCCGCTGCCGTTTCGCCGTCAAGCTCCGATCGTCTGCAGGGTTCGGCGGTTTCCTGTCTACTGGCGATACACGATTTTTGTGATATCGTCGT CCAATTGGAAAGGGAATAGAATCCGAATCTCAAGTTCTCGTAATGAAGGGAGGAATCGTGTTCCGGTATATCTGAATGTGTACGATCTCACCTCTGTAAA TACCTACCTCTATTGGTTCGGCCTCGGCATTTTCCATTCCGGCGTTGAAGTCCACGGGATGGAGTTTAGTTTTGGAGCACATGAGTACCCTAGCAGTGGG ATTTTTGAGGTGGAACCACGAAGTTGTCCAGGGTTCATCTTTCGGCGAGCAGTGTATCTGGGCAAAACCAGCATGTCGCGTGCAGAAGTTCAGTCGTTGA TGGAGCATATTTCTACAGAATATCACGGTGATTGTTATCATTTGATTGCCAAAAATTGCAATCACTTCACAAATGATGCTTGCATGAAACTAACGGGGAA GACTATCCCTGGATGGGTAAATAGGATGGCTCGGTTAGGTTCTTTCTGCAATTGTCTGCTACCAGAAAGTATTAAGATAGCACCAGTTCGACGTATGACC GAACATGCAGCACCCTGCTACCCATACCCAACGGCGAGGTTTCATTTATAA
AA sequence Show only first row Show all	>Lus10004372 pacid=23151925 polypeptide=Lus10004372 locus=Lus10004372.g ID=Lus10004372.BGIv1.0 annot-version=v1.0 MDQRSQSGMDMISSLPAEILKYHILNLLTVNEQARTSVLSKQWRSIWLSLIIPSPTFALQVSTMNPIIQSSIDNIIARLASRSVEELTLEAEDYNVSTGL FALVELAKLVLTGCCLVHAPPPSFQGFANLTSVGLSNVLLEVDLSDLVSTWCPVLTTLEVHRCDCVDALVVDSRRLEILDITSDFRSICFRNAPVLKWLR VETESESRLPSGHMKGSMRFLRFRETFGNVLPTLEEVLMGSAEGHCLDFLRLRSQDLTFHLPPADGCLPSPLSQFLFNIASLCHLALVQQLSLLQALELL HFFPLPFRRQAPIVCRVRRFPVYWRYTIFVISSSNWKGNRIRISSSRNEGRNRVPVYLNVYDLTSVNTYLYWFGLGIFHSGVEVHGMEFSFGAHEYPSSG IFEVEPRSCPGFIFRRAVYLGKTSMSRAEVQSLMEHISTEYHGDCYHLIAKNCNHFTNDACMKLTGKTIPGWVNRMARLGSFCNCLLPESIKIAPVRRMT EHAAPCYPYPTARFHL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G47310			PPPDE putative thiol peptidase...		Lus10004372 [exp]	0	1
AT4G17170		ATRAB-B1B, AT-R...	ARABIDOPSIS RAB GTPASE HOMOLOG...		Lus10038744 [exp]	7.1	0.8226
AT2G22475		GEM	GL2-EXPRESSION MODULATOR, GRAM...		Lus10025728 [exp]	9.5	0.8026
AT3G47160			RING/U-box superfamily protein...		Lus10006447 [exp]	16.6	0.8085
AT4G31860			Protein phosphatase 2C family ...		Lus10042416 [exp]	17.3	0.8103
AT1G10650			SBP (S-ribonuclease binding pr...		Lus10013027 [exp]	21.1	0.8059
AT5G18070		DRT101	DNA-DAMAGE-REPAIR/TOLERATION 1...		Lus10012191 [exp]	21.7	0.7904
AT2G28370			Uncharacterised protein family...		Lus10037399 [exp]	25.6	0.7971
AT1G11910		ATAPA1, APA1	aspartic proteinase A1 (.1)		Lus10032636 [exp]	26.1	0.8072
AT5G13180	NAC	VNDIP2, ANAC083...	VND-interacting 2, NAC domain ...		Lus10002581 [exp]	26.5	0.8064
AT5G39570			unknown protein		Lus10029322 [exp]	31.9	0.7373

Compare expression of checked genes

Lus10004372 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.