Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G36730 355 / 1e-120 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G29760 229 / 1e-69 OTP81 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G21065 220 / 2e-68 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT2G02980 222 / 6e-68 OTP85 ORGANELLE TRANSCRIPT PROCESSING 85, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G56310 213 / 2e-65 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G13410 211 / 8e-65 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G11290 217 / 1e-64 CRR22 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G49170 216 / 5e-64 EMB2261 embryo defective 2261, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G20540 210 / 6e-64 MEF21 mitochondrial editing factor 21 (.1) AT5G59200 207 / 9e-63 OTP80 ORGANELLE TRANSCRIPT PROCESSING 80, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040171 [exp] 513 / 0 AT2G36730 456 / 4e-159 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10040680 [exp] 244 / 2e-75 AT2G29760 926 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10018223 [exp] 238 / 5e-73 AT2G29760 931 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10031430 [exp] 218 / 2e-68 AT5G06540 350 / 1e-115 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10010901 [exp] 218 / 6e-68 AT3G15930 360 / 2e-118 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10010320 [exp] 218 / 4e-66 AT2G34400 658 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10028837 [exp] 211 / 3e-65 AT1G11290 650 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10031989 [exp] 217 / 4e-65 AT3G26782 865 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10025490 [exp] 213 / 3e-64 AT2G33760 734 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G083900 [exp] 412 / 5e-143 AT2G36730 552 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G103600 [exp] 238 / 8e-74 AT1G08070 477 / 7e-160 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G125500 [exp] 228 / 3e-70 AT3G29230 829 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G031600 [exp] 229 / 8e-70 AT3G15930 784 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G168800 [exp] 225 / 3e-69 AT2G02980 860 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 85, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.017G001000 [exp] 224 / 2e-68 AT4G21065 793 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.003G223900 [exp] 222 / 2e-68 AT5G56310 508 / 1e-176 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.015G034900 [exp] 221 / 2e-68 AT4G21065 370 / 2e-122 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.005G012600 [exp] 221 / 5e-67 AT2G29760 540 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.018G071800 [exp] 220 / 1e-66 AT1G08070 606 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10004373 pacid=23151916 polypeptide=Lus10004373 locus=Lus10004373.g ID=Lus10004373.BGIv1.0 annot-version=v1.0 ATGAGGGGTTCAGGATTCGAACCGGACGAAGCGACCATGGTGGTCATGCTTTCGCTTTCGGCAGAAGTAGGCAACTTAGGGTTAGGGAAATGGATTCATT CACAAGTGATTAAGGGGAGAATGGAATTGAATTACCAGCTGGGCACAGCCATTGTTGACATGTACGCAAAGAGTGGGAGTGTAGGATATGCAATGTCGGT TTTCGGAAGCATGGAGAAGAGAAATGTGTGGACTTGGAGTGCTATGATTTTGGGGTTGGCTCAACACGGGTTCGCAAAGGAAGGGCTCGAACTATTTCAT CAGATGATCGAGACGTCGTCTATCCGCCCTAATTACGTGACCTTCCTCGGAGTCCTTTGCGCTTGTAGCCATGCTGGTCTGGTAGAGGACGGGTTTCGAT ACTTCCACGAAATGGAGCACCAGCACGGGATCAAACCCACGGTGGTGCACTACGGTGCAATGGTTGATATACTTGCTCGTGCAGGCCACCTGAGGGAAGC TTACAACTTTGTAACACATATGCCTCACCAGAACGACCCGACAGTGTTAAGAACATTGTTAGGAGCTTGCAGCAACCGCAGCGAGAATGACGACGATGGA GTTGCGGATAAGGTAAGGAAGCGCTTGCTGGAAGTGGAACCGAGGAGAAGTGGGAACCTTGTTATGGTTGCAAAGATGTATGCTGATGCAGGGATGTGGC AGCGAGTTGCAGATGTAAGGAAGGTTATGAGGGATGGCGGTCTGAAGACAAGAGGTGGCGAGAGTTGTCTCGAATTAGATGGCTTGATTCATCGGTTCTT CTCTGGATATAGCTGGCAAGAATATCCTGAAATTCTACACCAGTTTCTAACTGCATTGGACCTGCACCTTAAGACGGTAAACATTGATTGA
AA sequence Show only first row Show all	>Lus10004373 pacid=23151916 polypeptide=Lus10004373 locus=Lus10004373.g ID=Lus10004373.BGIv1.0 annot-version=v1.0 MRGSGFEPDEATMVVMLSLSAEVGNLGLGKWIHSQVIKGRMELNYQLGTAIVDMYAKSGSVGYAMSVFGSMEKRNVWTWSAMILGLAQHGFAKEGLELFH QMIETSSIRPNYVTFLGVLCACSHAGLVEDGFRYFHEMEHQHGIKPTVVHYGAMVDILARAGHLREAYNFVTHMPHQNDPTVLRTLLGACSNRSENDDDG VADKVRKRLLEVEPRRSGNLVMVAKMYADAGMWQRVADVRKVMRDGGLKTRGGESCLELDGLIHRFFSGYSWQEYPEILHQFLTALDLHLKTVNID

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G36730			Pentatricopeptide repeat (PPR)...		Lus10004373 [exp]	0	1
AT2G37320			Tetratricopeptide repeat (TPR)...		Lus10009070 [exp]	2.0	0.8906
AT5G23040		CDF1	CELL GROWTH DEFECT FACTOR 1, P...		Lus10000868 [exp]	2.0	0.8759
AT1G03540			Pentatricopeptide repeat (PPR-...		Lus10033713 [exp]	3.5	0.8639
AT5G22300		AtNIT4, NIT4	nitrilase 4 (.1)		Lus10018449 [exp]	3.7	0.8499
AT1G62260		MEF9	mitochondrial editing factor 9...		Lus10012514 [exp]	4.5	0.8526
AT5G16860			Tetratricopeptide repeat (TPR)...		Lus10028593 [exp]	4.9	0.8514
AT5G05830			RING/FYVE/PHD zinc finger supe...		Lus10028249 [exp]	5.2	0.8305
AT1G13410			Tetratricopeptide repeat (TPR)...		Lus10021069 [exp]	6.7	0.8520
					Lus10029579 [exp]	11.4	0.8213
AT3G49710			Pentatricopeptide repeat (PPR)...		Lus10006743 [exp]	13.2	0.7811

Compare expression of checked genes

Lus10004373 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.