Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G58210 111 / 1e-27 EMB1674 EMBRYO DEFECTIVE 1674, kinase interacting family protein (.1) AT5G02520 64 / 1e-11 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040172 [exp] 178 / 3e-57 AT1G58210 49 / 5e-08 EMBRYO DEFECTIVE 1674, kinase interacting family protein (.1) Lus10025814 [exp] 78 / 5e-16 AT5G02520 100 / 1e-21 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G036100 [exp] 124 / 3e-34 AT1G58210 127 / 6e-33 EMBRYO DEFECTIVE 1674, kinase interacting family protein (.1) Potri.007G124300 [exp] 120 / 5e-32 AT1G58210 113 / 5e-27 EMBRYO DEFECTIVE 1674, kinase interacting family protein (.1) Potri.004G077400 [exp] 79 / 9e-17 AT5G02520 121 / 4e-29 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF09133 [flax] [poplar] SANTA SANTA (SANT Associated)
Representative CDS sequence Show only first row Show all	>Lus10004374 pacid=23151928 polypeptide=Lus10004374 locus=Lus10004374.g ID=Lus10004374.BGIv1.0 annot-version=v1.0 ATGTCATCAAAGAGGAGAAGTAGCAGAAACCCAGTTCTGGAAGCTTTGACTCGGAGCCCTTTATCTCCAAAGACATTGCGCAGCCCTTCTACTTTACATT TCCTTAAATCAGTTTCTTTGTTTGATTGGTGGCTTGTTCAGGCACAAGATAATGGGATTGCCGTTGAAGGCTTTGCTTACAGAGAGTTAGGAGCTCGACT ATTCCGCTCTGCACCAATTCTAAACCGCCACGATTCCACCACTTTGAAGACCGTAGATGGCATCACTATCAAACTGAGCAGCCTAATAGATAGATCGCGC ACAATGCAGAGTGGCTTTCCCGTTTCAGTCTGCAACCGGTTCCAGCTCGGATTTCCTTATGACTGGGAAGATGTTACAGCTCAACTTGATGCTAGCGACA GCGGAGGTGTTCCAGCTCTGTTGCCAACCTCCTTTGACGATCTCTCGGTAACGAAGCTTCACGATCTCGCAATGTCAATCCCCGAAGGTTCCGAAGGTGA TTTCTGGGACATGCTAGTGAAAGAGCACAAAGGCGATGAAGTACATCATATCAAACATGTTCCCAGCACGAAAAACTCAGAAGCAGGTAACGGAAATGTC AGCAAGGGTGAAGACGGAAAGAGAGACGAGGTAAACTCAGATATGGAAGTTGGCGGGTTTGTCCGTGGTGGTGTTGTGACGAGAAGTATGAGCAAGAGAA GAAAGCAACAAGCAGAGATTGTGATTGCATCAGCAGGGGGTATCAAAGGACAGTAG
AA sequence Show only first row Show all	>Lus10004374 pacid=23151928 polypeptide=Lus10004374 locus=Lus10004374.g ID=Lus10004374.BGIv1.0 annot-version=v1.0 MSSKRRSSRNPVLEALTRSPLSPKTLRSPSTLHFLKSVSLFDWWLVQAQDNGIAVEGFAYRELGARLFRSAPILNRHDSTTLKTVDGITIKLSSLIDRSR TMQSGFPVSVCNRFQLGFPYDWEDVTAQLDASDSGGVPALLPTSFDDLSVTKLHDLAMSIPEGSEGDFWDMLVKEHKGDEVHHIKHVPSTKNSEAGNGNV SKGEDGKRDEVNSDMEVGGFVRGGVVTRSMSKRRKQQAEIVIASAGGIKGQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G58210		EMB1674	EMBRYO DEFECTIVE 1674, kinase ...		Lus10004374 [exp]	0	1
AT4G31720		STG1, TAFII15, ...	TBP-ASSOCIATED FACTOR 10, SALT...		Lus10034375 [exp]	1.7	0.9391
AT3G13200		EMB2769	EMBRYO DEFECTIVE 2769, Cwf15 /...		Lus10022566 [exp]	2.8	0.9137
					Lus10009362 [exp]	3.2	0.9235
AT3G60330		AHA7	H\(+\)-ATPase 7, H\(+\)-ATPase...		Lus10042904 [exp]	6.7	0.9148
AT5G58030			Transport protein particle (TR...		Lus10003350 [exp]	7.3	0.8927
AT5G53530		VPS26A	vacuolar protein sorting 26A (...		Lus10008868 [exp]	7.7	0.9105
AT1G13570			F-box/RNI-like superfamily pro...		Lus10040760 [exp]	8.6	0.8820
AT1G67170			unknown protein		Lus10019966 [exp]	9.2	0.8916
AT5G63080			2-oxoglutarate (2OG) and Fe(II...		Lus10001249 [exp]	10.2	0.9065
AT3G46060		ARA3, Ara-3, At...	RAB GTPase homolog 8A (.1.2.3)		Lus10025309 [exp]	10.8	0.9062

Compare expression of checked genes

Lus10004374 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.