Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G35680 367 / 3e-127 Phosphotyrosine protein phosphatases superfamily protein (.1) AT5G56610 265 / 1e-88 Phosphotyrosine protein phosphatases superfamily protein (.1.2) AT3G23610 48 / 2e-06 DSPTP1 dual specificity protein phosphatase 1 (.1.2.3) AT3G10940 43 / 0.0002 LSF2 LIKE SEX4 2, dual specificity protein phosphatase (DsPTP1) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040174 [exp] 633 / 0 AT2G35680 369 / 5e-128 Phosphotyrosine protein phosphatases superfamily protein (.1) Lus10012928 [exp] 294 / 4e-99 AT5G56610 294 / 5e-99 Phosphotyrosine protein phosphatases superfamily protein (.1.2) Lus10034998 [exp] 238 / 2e-77 AT5G56610 247 / 1e-82 Phosphotyrosine protein phosphatases superfamily protein (.1.2) Lus10021940 [exp] 49 / 1e-06 AT3G23610 248 / 1e-84 dual specificity protein phosphatase 1 (.1.2.3) Lus10034214 [exp] 46 / 2e-05 AT3G10940 405 / 5e-144 LIKE SEX4 2, dual specificity protein phosphatase (DsPTP1) family protein (.1) Lus10034033 [exp] 43 / 4e-05 AT3G23610 168 / 5e-54 dual specificity protein phosphatase 1 (.1.2.3) Lus10029052 [exp] 45 / 5e-05 AT3G10940 394 / 2e-139 LIKE SEX4 2, dual specificity protein phosphatase (DsPTP1) family protein (.1) Lus10033625 [exp] 45 / 8e-05 AT5G04530 461 / 9e-156 3-ketoacyl-CoA synthase 19 (.1) Lus10017659 [exp] 41 / 0.0006 ND 37 / 0.006
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G080000 [exp] 431 / 2e-152 AT2G35680 385 / 3e-134 Phosphotyrosine protein phosphatases superfamily protein (.1) Potri.001G154700 [exp] 429 / 1e-151 AT2G35680 379 / 1e-131 Phosphotyrosine protein phosphatases superfamily protein (.1) Potri.014G045500 [exp] 364 / 3e-126 AT2G35680 360 / 2e-124 Phosphotyrosine protein phosphatases superfamily protein (.1) Potri.002G136700 [exp] 353 / 8e-122 AT2G35680 350 / 1e-120 Phosphotyrosine protein phosphatases superfamily protein (.1) Potri.010G033000 [exp] 44 / 5e-05 AT3G23610 249 / 4e-85 dual specificity protein phosphatase 1 (.1.2.3) Potri.008G020500 [exp] 44 / 7e-05 ND / Potri.019G048600 [exp] 42 / 0.0003 AT3G10940 417 / 2e-148 LIKE SEX4 2, dual specificity protein phosphatase (DsPTP1) family protein (.1) Potri.010G238700 [exp] 42 / 0.0005 ND /
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0031 [flax] [poplar] Phosphatase PF00782 [flax] [poplar] DSPc Dual specificity phosphatase, catalytic domain
Representative CDS sequence Show only first row Show all	>Lus10004376 pacid=23151932 polypeptide=Lus10004376 locus=Lus10004376.g ID=Lus10004376.BGIv1.0 annot-version=v1.0 ATGATAATTGAAGAAGCGAACGTGGAAGCTGGTAAGTTGGGTGTGGATAGTGGTGTTGAGGAAGATAGGTTGGTCGTTTGGGATGCGAAGCGGGTGTTGA TCGGAGCAGGCGCAAGGGCTCTGTTTTATCCGACTTTGGTTTACAACGTGGTTAGAAACAAGTGTCAGGCTGAGTTCCGTTGGTGGGATAGGGTGGATAA GTATATATTGTTAGGTGCTGTTCCGTTCCCTGGTGATGTTCCTCGTCTTAAAGAGCTTGGTGTTCGTGGAGTTGTTACAATGAATGAGCCTTATGAAACA TTGGTTTCCACAACTCTGTATCATGAACATGGGATTGACCACCTGGTACTCCCTACAAGGGACTATTGTTTCGCTCCTTCATTGAGAGACATATACCGGG CTGTTGAATTTATTCATGTCAATGCGTTACAGGGGAGGACAACCTATGTCCACTGCAAGGCTGGTCGAGGACGCAGCACAACAATTGTCTTATGCTACCT CGTACAACACAAGCATATGACACCCAAGGCTGCCTATGATTATGTAAAGTCGATTAGACCAAGAGTGCTTCTGGCATCTCCACAGCGGAAGGCTGTTGAA GAATTCTATCTCCTGAAGGTGAAAACTCACAGTTTGTACAAGAATTTGAACAGTCTTTTTCTGAAGACCCCCAGGCAGCAAGGTGAAGAGCTGTTCAGTT CGAAGGATCTTGTGGCATTTGATGATGGCTCTGTCGTAGTTGTGACGGCATCTGATCTAGACGGATATGATCCAAGGCTCGTGTCTAGTTCCCCGAAGGG TGATATTTGGGCCGACTTGAGCGTAGTTTACGGGGTACGGGTCGCTGGGCAGGCCGTCCTGGCTAGAATCTCTTGCTTGTGGCTCCATAACCAGAAGCTT GCAGGGAAGCAACTAAACAGGAAGAGCAGTTGCTCGATCAGCACGGACCAATTGGGAGGTATAAGCGTAGACATTCACGTCTACTAA
AA sequence Show only first row Show all	>Lus10004376 pacid=23151932 polypeptide=Lus10004376 locus=Lus10004376.g ID=Lus10004376.BGIv1.0 annot-version=v1.0 MIIEEANVEAGKLGVDSGVEEDRLVVWDAKRVLIGAGARALFYPTLVYNVVRNKCQAEFRWWDRVDKYILLGAVPFPGDVPRLKELGVRGVVTMNEPYET LVSTTLYHEHGIDHLVLPTRDYCFAPSLRDIYRAVEFIHVNALQGRTTYVHCKAGRGRSTTIVLCYLVQHKHMTPKAAYDYVKSIRPRVLLASPQRKAVE EFYLLKVKTHSLYKNLNSLFLKTPRQQGEELFSSKDLVAFDDGSVVVVTASDLDGYDPRLVSSSPKGDIWADLSVVYGVRVAGQAVLARISCLWLHNQKL AGKQLNRKSSCSISTDQLGGISVDIHVY

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G35680			Phosphotyrosine protein phosph...		Lus10004376 [exp]	0	1
AT3G15890			Protein kinase superfamily pro...		Lus10011490 [exp]	1.0	0.8995
AT4G17170		ATRAB-B1B, AT-R...	ARABIDOPSIS RAB GTPASE HOMOLOG...		Lus10038744 [exp]	3.0	0.8866
AT5G06370			NC domain-containing protein-r...		Lus10029402 [exp]	3.0	0.8745
AT5G22360		ATVAMP714	vesicle-associated membrane pr...		Lus10034189 [exp]	6.9	0.8814
AT3G24315		ATSEC20	Sec20 family protein (.1)		Lus10014460 [exp]	7.1	0.8605
AT5G40470			RNI-like superfamily protein (...		Lus10022269 [exp]	7.1	0.8743
AT4G35750			SEC14 cytosolic factor family ...		Lus10041841 [exp]	7.4	0.8734
AT1G67600			Acid phosphatase/vanadium-depe...		Lus10011373 [exp]	7.5	0.8801
AT1G16180			Serinc-domain containing serin...		Lus10026111 [exp]	7.5	0.8853
AT2G35680			Phosphotyrosine protein phosph...		Lus10040174 [exp]	7.5	0.8938

Compare expression of checked genes

Lus10004376 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.