Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G16780 223 / 3e-71 HD ATHB2, HAT4, ATHB-2 ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 2, homeobox protein 2 (.1) AT5G47370 212 / 4e-67 HD HAT2 Homeobox-leucine zipper protein 4 (HB-4) / HD-ZIP protein (.1) AT2G44910 209 / 1e-65 HD ATHB4, ATHB-4 ARABIDOPSIS THALIANA HOMEOBOX-LEUCINE ZIPPER PROTEIN 4, homeobox-leucine zipper protein 4 (.1) AT3G60390 204 / 8e-64 HD HAT3 homeobox-leucine zipper protein 3 (.1) AT5G06710 201 / 4e-62 HD HAT14 homeobox from Arabidopsis thaliana (.1.2) AT4G17460 199 / 4e-62 HD HAT1 Homeobox-leucine zipper protein 4 (HB-4) / HD-ZIP protein (.1) AT4G37790 189 / 2e-58 HD HAT22 Homeobox-leucine zipper protein family (.1) AT2G22800 181 / 3e-55 HD HAT9 Homeobox-leucine zipper protein family (.1) AT2G01430 152 / 4e-44 HD ATHB17, ATHB-17 ARABIDOPSIS THALIANA HOMEOBOX-LEUCINE ZIPPER PROTEIN 17, homeobox-leucine zipper protein 17 (.1) AT1G70920 130 / 1e-36 HD ATHB18 homeobox-leucine zipper protein 18 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040175 [exp] 336 / 3e-115 AT4G16780 280 / 1e-93 ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 2, homeobox protein 2 (.1) Lus10007849 [exp] 239 / 3e-77 AT4G16780 303 / 6e-103 ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 2, homeobox protein 2 (.1) Lus10004759 [exp] 235 / 1e-75 AT4G16780 305 / 1e-103 ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 2, homeobox protein 2 (.1) Lus10021064 [exp] 197 / 8e-62 AT5G06710 265 / 3e-88 homeobox from Arabidopsis thaliana (.1.2) Lus10004161 [exp] 195 / 1e-59 AT5G06710 263 / 5e-86 homeobox from Arabidopsis thaliana (.1.2) Lus10029293 [exp] 193 / 9e-59 AT5G06710 274 / 5e-90 homeobox from Arabidopsis thaliana (.1.2) Lus10016254 [exp] 193 / 1e-58 AT5G06710 274 / 4e-90 homeobox from Arabidopsis thaliana (.1.2) Lus10019256 [exp] 137 / 5e-39 AT4G37790 162 / 3e-49 Homeobox-leucine zipper protein family (.1) Lus10011569 [exp] 134 / 2e-37 AT4G37790 162 / 3e-49 Homeobox-leucine zipper protein family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G079800 [exp] 244 / 3e-79 AT4G16780 320 / 8e-110 ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 2, homeobox protein 2 (.1) Potri.001G155100 [exp] 238 / 4e-77 AT4G16780 335 / 6e-116 ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 2, homeobox protein 2 (.1) Potri.014G045100 [exp] 210 / 2e-66 AT3G60390 263 / 5e-87 homeobox-leucine zipper protein 3 (.1) Potri.002G136400 [exp] 202 / 4e-63 AT3G60390 285 / 5e-96 homeobox-leucine zipper protein 3 (.1) Potri.016G058600 [exp] 197 / 2e-62 AT5G06710 239 / 9e-79 homeobox from Arabidopsis thaliana (.1.2) Potri.016G059000 [exp] 197 / 8e-61 AT5G06710 241 / 8e-78 homeobox from Arabidopsis thaliana (.1.2) Potri.006G193700 [exp] 196 / 3e-60 AT5G06710 251 / 1e-81 homeobox from Arabidopsis thaliana (.1.2) Potri.001G229700 [exp] 194 / 3e-59 AT5G06710 269 / 4e-88 homeobox from Arabidopsis thaliana (.1.2) Potri.005G147100 [exp] 191 / 5e-59 AT4G37790 270 / 1e-90 Homeobox-leucine zipper protein family (.1) Potri.009G023600 [exp] 194 / 8e-59 AT5G06710 243 / 8e-78 homeobox from Arabidopsis thaliana (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02183 [flax] [poplar] HALZ Homeobox associated leucine zipper CL0123 [flax] [poplar] HTH PF00046 [flax] [poplar] Homeodomain Homeodomain CL0123 [flax] [poplar] PF04618 [flax] [poplar] HD-ZIP_N HD-ZIP protein N terminus
Representative CDS sequence Show only first row Show all	>Lus10004377 pacid=23151938 polypeptide=Lus10004377 locus=Lus10004377.g ID=Lus10004377.BGIv1.0 annot-version=v1.0 ATGGCTGAGAAACAAGATTTGAGGCTCAGCTTGAGCTTGGCTACTACTACTAGCTTCCCTGTTCACCACTCTGATTTGCAGCTCAAACCACCACCTCCTT CTTCCTGGATTGACACCAATCTCATCCTCAATCCTTCCTCTGATCCAGAGCCTTATATTAAGTGTCTTTGCAGGTCCGATTTCCGAACCCACAAGATCTT TCCTCCGGGGTATCGACGTCAACCGGCTCCCACCCACCGCCGCCGAATCGCCGCCCCCCGCCCCCCCCCCCCCGCCGCCGAAGACTACGAGGAGGAAGCT GGCGTTTCGTCGCCCAACAGTACCATTTCCAGCGTCAGCGGGAATAAGAGAAGCGAGAGGGACGAGCCACTCGGATCTTCCGATCCTGACGCGGATCCAG CTTCCTCCGGCCGTGCCGGCGCCGGCAACAGTGACGACGATGACGGCGATACCTCCCGCAAGAAGCTCCGCCTCTCCAAAGGGCAGGCCGCTGTACTTGA GGACAGCTTCAAAGAGCACCACACTCTCAACCCCAAGCAAAAGTCTGCATTGGCTAAGCAGCTAGGACTCAGGCCTAGACAAGTGGAGGTGTGGTTTCAG AACAGACGGGCTAGGACAAAGTTGAAGCAAACGGAGGTTGACTGTGAGTTTTTAAAGCGATGCTGTGAGAATCTGACGGAGGAGAACCGACGGCTGCAAA AAGAAGTGCAGGAACTGAGGGCACTGAAGCTTTCCCCGCAGTTTTACATGCAGATGACCCCACCAACCACGCTGACCATGTGCCCATCATGTGAGCGTGT CGGGGTCCCACCGTCCACTTCATCATCCTCCGCACCCACGTCAGCACAACAACCACCATTGGTTGCCCACCCCAGCTTCATGGGCCTGGCCCATCAGCAT CGGCCCATGCCTCATGTAAACCCATGGGCCGCGGCGTCTTCAACCGCTCACGCACCATTGAATCTGCTCCGTCCTCGGTCGTGA
AA sequence Show only first row Show all	>Lus10004377 pacid=23151938 polypeptide=Lus10004377 locus=Lus10004377.g ID=Lus10004377.BGIv1.0 annot-version=v1.0 MAEKQDLRLSLSLATTTSFPVHHSDLQLKPPPPSSWIDTNLILNPSSDPEPYIKCLCRSDFRTHKIFPPGYRRQPAPTHRRRIAAPRPPPPAAEDYEEEA GVSSPNSTISSVSGNKRSERDEPLGSSDPDADPASSGRAGAGNSDDDDGDTSRKKLRLSKGQAAVLEDSFKEHHTLNPKQKSALAKQLGLRPRQVEVWFQ NRRARTKLKQTEVDCEFLKRCCENLTEENRRLQKEVQELRALKLSPQFYMQMTPPTTLTMCPSCERVGVPPSTSSSSAPTSAQQPPLVAHPSFMGLAHQH RPMPHVNPWAAASSTAHAPLNLLRPRS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G16780	HD	ATHB2, HAT4, AT...	ARABIDOPSIS THALIANA HOMEOBOX ...		Lus10004377 [exp]	0	1
AT4G16780	HD	ATHB2, HAT4, AT...	ARABIDOPSIS THALIANA HOMEOBOX ...		Lus10040175 [exp]	1.0	0.9458
AT1G75250	MYB	RSM3, ATRL6	RADIALIS-LIKE SANT/MYB 3, RAD-...		Lus10026009 [exp]	5.1	0.9129
AT2G16630			Pollen Ole e 1 allergen and ex...		Lus10042394 [exp]	6.9	0.9071
AT1G15170			MATE efflux family protein (.1...		Lus10029694 [exp]	8.4	0.8967
AT1G78020			Protein of unknown function (D...		Lus10019672 [exp]	9.4	0.8545
AT4G36930	bHLH	SPT, bHLH024	SPATULA, basic helix-loop-heli...		Lus10038020 [exp]	10.6	0.8914
AT5G46090			Protein of unknown function (D...		Lus10018635 [exp]	11.1	0.9053
AT3G54220	GRAS	SGR1, SCR	SHOOT GRAVITROPISM 1, SCARECRO...		Lus10016496 [exp]	13.3	0.8446
AT1G14820			Sec14p-like phosphatidylinosit...		Lus10001584 [exp]	13.9	0.8383
AT3G19550			unknown protein		Lus10013900 [exp]	14.5	0.8918

Compare expression of checked genes

Lus10004377 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.