Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G17440 72 / 2e-14 Protein of unknown function (DUF1639) (.1), Protein of unknown function (DUF1639) (.2) AT3G60410 62 / 1e-10 Protein of unknown function (DUF1639) (.1), Protein of unknown function (DUF1639) (.2), Protein of unknown function (DUF1639) (.3) AT1G25370 53 / 1e-07 Protein of unknown function (DUF1639) (.1) AT4G20300 52 / 3e-07 Protein of unknown function (DUF1639) (.1), Protein of unknown function (DUF1639) (.2) AT1G48770 50 / 5e-07 Protein of unknown function (DUF1639) (.1) AT3G18295 44 / 5e-05 Protein of unknown function (DUF1639) (.1) AT1G55340 41 / 0.0006 Protein of unknown function (DUF1639) (.1), Protein of unknown function (DUF1639) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040176 [exp] 133 / 5e-37 AT3G60410 76 / 1e-16 Protein of unknown function (DUF1639) (.1), Protein of unknown function (DUF1639) (.2), Protein of unknown function (DUF1639) (.3) Lus10010984 [exp] 118 / 1e-30 AT3G60410 89 / 3e-20 Protein of unknown function (DUF1639) (.1), Protein of unknown function (DUF1639) (.2), Protein of unknown function (DUF1639) (.3) Lus10007850 [exp] 67 / 2e-12 AT3G60410 77 / 2e-16 Protein of unknown function (DUF1639) (.1), Protein of unknown function (DUF1639) (.2), Protein of unknown function (DUF1639) (.3) Lus10038942 [exp] 45 / 3e-06 AT1G25370 72 / 7e-17 Protein of unknown function (DUF1639) (.1) Lus10027232 [exp] 44 / 2e-05 AT1G68340 75 / 3e-17 Protein of unknown function (DUF1639) (.1) Lus10038379 [exp] 45 / 3e-05 AT4G20300 188 / 1e-58 Protein of unknown function (DUF1639) (.1), Protein of unknown function (DUF1639) (.2) Lus10036240 [exp] 45 / 7e-05 AT4G20300 217 / 3e-67 Protein of unknown function (DUF1639) (.1), Protein of unknown function (DUF1639) (.2) Lus10035144 [exp] 44 / 0.0001 AT1G25370 87 / 2e-20 Protein of unknown function (DUF1639) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G122700 [exp] 64 / 2e-11 AT1G25370 110 / 1e-28 Protein of unknown function (DUF1639) (.1) Potri.012G055200 [exp] 60 / 3e-10 AT3G18295 109 / 3e-29 Protein of unknown function (DUF1639) (.1) Potri.002G136200 [exp] 60 / 5e-10 AT3G60410 109 / 6e-28 Protein of unknown function (DUF1639) (.1), Protein of unknown function (DUF1639) (.2), Protein of unknown function (DUF1639) (.3) Potri.014G044800 [exp] 60 / 5e-10 AT3G60410 105 / 6e-26 Protein of unknown function (DUF1639) (.1), Protein of unknown function (DUF1639) (.2), Protein of unknown function (DUF1639) (.3) Potri.008G122600 [exp] 59 / 1e-09 AT1G25370 100 / 6e-25 Protein of unknown function (DUF1639) (.1) Potri.001G073400 [exp] 51 / 7e-07 AT4G20300 226 / 3e-71 Protein of unknown function (DUF1639) (.1), Protein of unknown function (DUF1639) (.2) Potri.003G157500 [exp] 51 / 7e-07 AT4G20300 201 / 2e-61 Protein of unknown function (DUF1639) (.1), Protein of unknown function (DUF1639) (.2) Potri.018G059200 [exp] 44 / 0.0001 AT1G55340 133 / 3e-38 Protein of unknown function (DUF1639) (.1), Protein of unknown function (DUF1639) (.2) Potri.006G233100 [exp] 41 / 0.001 AT1G55340 130 / 9e-37 Protein of unknown function (DUF1639) (.1), Protein of unknown function (DUF1639) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07797 [flax] [poplar] DUF1639 Protein of unknown function (DUF1639)
Representative CDS sequence Show only first row Show all	>Lus10004378 pacid=23151920 polypeptide=Lus10004378 locus=Lus10004378.g ID=Lus10004378.BGIv1.0 annot-version=v1.0 ATGGCAACGGCGCCGGTGAAACCGCATCCGCTCCACAACTTCACTGTCCCTCTCAAATGGGGTCAAACCGTCAAGCTTGCCTCAGCAAACTCTCACAGCC ACAACAACAATCGCGGCGGAGATGGTGGAAGTAATAGCAATCAACCCCGTCCTGCTCATCCTCACTTGTCTGAATCGGATACGGAGTCCGATCGCGAAAT TTTCGCAGGTAATACTCCACCTCCTCCTGCTACTACTGCTAATACTACCGTCGTTCATCGGGTGGGATCCCGCTCCACCCGCCAGCAGCGGTCCTCGTTC ACCGCTTGCTCATCCGTCTTCCGCAAACGGGATCCCGAGGAGGAGCTGCGGAAAGAAGCCGCGATTACGGAAGTGAAGAAGGAAACCGGTGAGGCGGAAG AGGAGGAAGAAGACGGAGAAATAGAAGCGAATCAGCAGAGACCGTGGAAATTAAGGCCGAGGAGGGGGCTCTCTTGCGCCGGCGGCGGAGAACAGACGAT CCAGCAGAAGGAAGGCGTTCAGGCGAAATCGGTGAGACTGAGGGGGATGATCACGGAGGGAGGAGGCGATGTTGTATGCGGCAGCGGCGGGGGCGTTGGT AGTGGTGGTGGTGGTGGAGGAGTTTTGGAGAAGAAGGAGAAGAGGAAGATATGGATTGCTCTGTCCAAGGATGAGATTGAAGAGGATATCTTCATCATGA CCGGGTCAAGACCCTCACGACGGCCCAAAAAACGTGCCAAGAACGTCCAGAAATTGCTTGATAACGTCTTCCCTGGTTTGTGGCTGGTGGGCAATACGGT TGATTCTTACAGAATTGCTGAGACCCCGATGATGGTCCGTCTATCCATATTGTTCATCAACGTTCAATTCTGTCTTGAAATGCATTCTATTTCTTGGTTT CCTCTTGCTATGTGCTGTGTTTTCTCGTCATATATGCGTACTGAAGGTTGGAATCGTTGTTGTTGCAGAGGTAGATTGATGACTTACAGTCCGGTGCTTA GAAAAGAAGAAGAAGAGCCGATCGGATCAGTAGAGGCCTCAACTGAAGGATTAATGGTGGAACTGTCAACTGTGTAA
AA sequence Show only first row Show all	>Lus10004378 pacid=23151920 polypeptide=Lus10004378 locus=Lus10004378.g ID=Lus10004378.BGIv1.0 annot-version=v1.0 MATAPVKPHPLHNFTVPLKWGQTVKLASANSHSHNNNRGGDGGSNSNQPRPAHPHLSESDTESDREIFAGNTPPPPATTANTTVVHRVGSRSTRQQRSSF TACSSVFRKRDPEEELRKEAAITEVKKETGEAEEEEEDGEIEANQQRPWKLRPRRGLSCAGGGEQTIQQKEGVQAKSVRLRGMITEGGGDVVCGSGGGVG SGGGGGGVLEKKEKRKIWIALSKDEIEEDIFIMTGSRPSRRPKKRAKNVQKLLDNVFPGLWLVGNTVDSYRIAETPMMVRLSILFINVQFCLEMHSISWF PLAMCCVFSSYMRTEGWNRCCCRGRLMTYSPVLRKEEEEPIGSVEASTEGLMVELSTV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G17440			Protein of unknown function (D...		Lus10004378 [exp]	0	1
AT1G70330		"ENT1,AT", ENT1...	equilibrative nucleotide trans...		Lus10029162 [exp]	1.7	0.8834
AT3G01470	HD	HD-ZIP-1, HAT5,...	HOMEODOMAIN PROTEIN FROM ARABI...		Lus10022225 [exp]	6.3	0.8625
AT1G08315			ARM repeat superfamily protein...		Lus10039500 [exp]	6.9	0.8578
AT1G07080			Thioredoxin superfamily protei...		Lus10042270 [exp]	7.7	0.8502
AT1G03495			HXXXD-type acyl-transferase fa...		Lus10033754 [exp]	8.1	0.8623
AT4G22240			Plastid-lipid associated prote...		Lus10014790 [exp]	8.4	0.8530
AT1G10500		ATCPISCA	chloroplast-localized ISCA-lik...		Lus10012683 [exp]	11.2	0.8235
AT4G33940			RING/U-box superfamily protein...		Lus10012062 [exp]	13.2	0.8406
AT2G21970		SEP2	stress enhanced protein 2 (.1)		Lus10036629 [exp]	16.2	0.8343
AT5G20650		COPT5	copper transporter 5 (.1)		Lus10022671 [exp]	17.4	0.8275

Compare expression of checked genes

Lus10004378 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.