Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G17000 487 / 4e-174 Zinc-binding dehydrogenase family protein (.1) AT3G03080 484 / 1e-172 Zinc-binding dehydrogenase family protein (.1) AT5G16970 483 / 2e-172 AT-AER alkenal reductase (.1) AT5G16990 481 / 8e-172 Zinc-binding dehydrogenase family protein (.1) AT5G37980 478 / 2e-170 Zinc-binding dehydrogenase family protein (.1) AT1G26320 477 / 4e-170 Zinc-binding dehydrogenase family protein (.1.2) AT5G37940 476 / 1e-169 Zinc-binding dehydrogenase family protein (.1) AT5G16960 470 / 2e-167 Zinc-binding dehydrogenase family protein (.1) AT5G38000 462 / 3e-164 Zinc-binding dehydrogenase family protein (.1) AT3G59845 432 / 3e-152 Zinc-binding dehydrogenase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040177 [exp] 512 / 0 AT5G37980 480 / 3e-171 Zinc-binding dehydrogenase family protein (.1) Lus10010988 [exp] 512 / 0 AT5G16990 486 / 6e-174 Zinc-binding dehydrogenase family protein (.1) Lus10004380 [exp] 509 / 0 AT5G37980 477 / 4e-170 Zinc-binding dehydrogenase family protein (.1) Lus10010989 [exp] 506 / 0 AT5G16990 483 / 2e-172 Zinc-binding dehydrogenase family protein (.1) Lus10007832 [exp] 497 / 6e-178 AT5G16990 464 / 3e-165 Zinc-binding dehydrogenase family protein (.1) Lus10007853 [exp] 497 / 9e-178 AT5G16990 468 / 3e-166 Zinc-binding dehydrogenase family protein (.1) Lus10036289 [exp] 447 / 2e-158 AT5G16990 463 / 1e-164 Zinc-binding dehydrogenase family protein (.1) Lus10040589 [exp] 376 / 1e-128 AT1G65560 446 / 3e-156 Zinc-binding dehydrogenase family protein (.1) Lus10003638 [exp] 345 / 4e-119 AT3G03080 356 / 8e-124 Zinc-binding dehydrogenase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G006000 [exp] 483 / 5e-172 AT5G37980 493 / 2e-176 Zinc-binding dehydrogenase family protein (.1) Potri.007G143800 [exp] 481 / 1e-171 AT1G26320 490 / 4e-175 Zinc-binding dehydrogenase family protein (.1.2) Potri.017G005400 [exp] 479 / 1e-170 AT5G37980 488 / 3e-174 Zinc-binding dehydrogenase family protein (.1) Potri.017G005700 [exp] 479 / 3e-170 AT1G26320 496 / 1e-176 Zinc-binding dehydrogenase family protein (.1.2) Potri.007G142400 [exp] 478 / 3e-170 AT5G16990 491 / 1e-175 Zinc-binding dehydrogenase family protein (.1) Potri.007G143700 [exp] 476 / 2e-169 AT5G16970 495 / 2e-177 alkenal reductase (.1) Potri.017G002300 [exp] 471 / 9e-168 AT1G26320 488 / 2e-174 Zinc-binding dehydrogenase family protein (.1.2) Potri.017G002700 [exp] 469 / 5e-167 AT1G26320 490 / 4e-175 Zinc-binding dehydrogenase family protein (.1.2) Potri.007G143600 [exp] 468 / 1e-166 AT5G16970 501 / 1e-179 alkenal reductase (.1) Potri.017G002950 [exp] 428 / 7e-151 AT5G16970 464 / 7e-165 alkenal reductase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00107 [flax] [poplar] ADH_zinc_N Zinc-binding dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10004379 pacid=23151918 polypeptide=Lus10004379 locus=Lus10004379.g ID=Lus10004379.BGIv1.0 annot-version=v1.0 ATGGCAGAAGTTCATCAAGAAGAAGTGAAGCATAACACGCAGGTGGTGCTAACGGATTACGTCACCGGCTTCCCAAAGGAATCACACTTTTCAGTCTCCA CCGCCGCCACGATCAACCTGAAACTTCCGGAAGGTTCCGATTCCGTCCTCGTCAAGAACCTTTACCTTTCATGCGATCCTTACATGCGCAACCGCATGTC TCGTCCTGGTGGCGCCGATGAGCCCGGCTCCGATTCCTTCCGCCCCGGATCCGCGATTAAAGGGTTTGGAGTTAGCAAAGTGGTGGATTCAGGAGATTCT GATTTCAAAATTGGGGATTTGGTTTGGGGAATTACTGGCTGGGAAGAATATAGCATAATCCCTAACCCTAAGTCGTTATTCAAGATTGCCAACACTGATG TGCCCCTTTCTTACTACATTGGGATTCTCGGAGTGACTGCTTATTTCGGATTCCACGACGTCTGCGCTCCAAAGAAAGGAGAATATGTGTACATTTCAGC AGCATCTGGTGCAGTGGGCCAGCTGGTTGGCCAATTCGCCAAGCTGGCCGGTTGCTACGTTGTAGGAAGTGCCGGTACCAAAGACAAGGTCGAGTTGCTG AAGACCAAGTTCGGATTCGACGAGGCTTTCAATTACAAAGAGGAAACCGACTTGAACGCTGCTCTGAAAAGGTACTTCCCTGAAGGGATCGACATCTACT TTGAGAATGTGGGTGGGAAAATGCTGGACGCTGTGCTTCTCAACATGAGGGTGCGTGGCCGAATAGCAGTATGTGGGATGATCTCTCAATACAATCTTGA GCAAGCTGAAGGTGTGCACAACCTGACGAGTATAATATACAAGCGCGTTCGCATCCAAGGTTTCGCATCGTTCGACTACTTCAGTCGTTATGCTGAGCTT TTGGATGCGGTGGTGCCTTACATTAAGGAAGGTAAGATCGCGTATGTGGAGGACGTAGCTGAAGGATTGGAGAATGGACCTGCTGCACTGTTGGGGCTTT TCAGTGGCCGTAATGTCGGGAAGCAAGTTGTACTAGTGGCTCGCGAGTAA
AA sequence Show only first row Show all	>Lus10004379 pacid=23151918 polypeptide=Lus10004379 locus=Lus10004379.g ID=Lus10004379.BGIv1.0 annot-version=v1.0 MAEVHQEEVKHNTQVVLTDYVTGFPKESHFSVSTAATINLKLPEGSDSVLVKNLYLSCDPYMRNRMSRPGGADEPGSDSFRPGSAIKGFGVSKVVDSGDS DFKIGDLVWGITGWEEYSIIPNPKSLFKIANTDVPLSYYIGILGVTAYFGFHDVCAPKKGEYVYISAASGAVGQLVGQFAKLAGCYVVGSAGTKDKVELL KTKFGFDEAFNYKEETDLNAALKRYFPEGIDIYFENVGGKMLDAVLLNMRVRGRIAVCGMISQYNLEQAEGVHNLTSIIYKRVRIQGFASFDYFSRYAEL LDAVVPYIKEGKIAYVEDVAEGLENGPAALLGLFSGRNVGKQVVLVARE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G17000			Zinc-binding dehydrogenase fam...		Lus10004379 [exp]	0	1
AT2G30140			UDP-Glycosyltransferase superf...		Lus10042261 [exp]	1.7	0.9839
AT5G06740			Concanavalin A-like lectin pro...		Lus10016257 [exp]	2.0	0.9671
AT4G37990		CAD-B2, ATCAD8,...	CINNAMYL-ALCOHOL DEHYDROGENASE...		Lus10025706 [exp]	2.4	0.9761
AT4G01070		UGT72B1, GT72B1	UDP-GLUCOSE-DEPENDENT GLUCOSYL...		Lus10005951 [exp]	3.5	0.9757
AT1G78780			pathogenesis-related family pr...		Lus10042792 [exp]	3.7	0.9628
AT3G02100			UDP-Glycosyltransferase superf...		Lus10003455 [exp]	4.0	0.9625
AT2G29420		GST25, ATGSTU7	GLUTATHIONE S-TRANSFERASE 25, ...		Lus10016469 [exp]	4.5	0.9640
AT1G17170		ATGSTU24	Arabidopsis thaliana Glutathio...		Lus10030362 [exp]	4.5	0.9593
AT3G02875		ILR1	IAA-LEUCINE RESISTANT 1, Pepti...		Lus10021321 [exp]	5.3	0.9507
AT3G55470			Calcium-dependent lipid-bindin...		Lus10040291 [exp]	5.8	0.9462

Compare expression of checked genes

Lus10004379 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.