Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G37980 478 / 3e-170 Zinc-binding dehydrogenase family protein (.1) AT5G37940 474 / 8e-169 Zinc-binding dehydrogenase family protein (.1) AT5G16970 471 / 1e-167 AT-AER alkenal reductase (.1) AT1G26320 470 / 3e-167 Zinc-binding dehydrogenase family protein (.1.2) AT3G03080 469 / 6e-167 Zinc-binding dehydrogenase family protein (.1) AT5G16990 467 / 3e-166 Zinc-binding dehydrogenase family protein (.1) AT5G17000 466 / 9e-166 Zinc-binding dehydrogenase family protein (.1) AT5G38000 462 / 5e-164 Zinc-binding dehydrogenase family protein (.1) AT5G16960 460 / 3e-163 Zinc-binding dehydrogenase family protein (.1) AT3G59845 414 / 4e-145 Zinc-binding dehydrogenase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040177 [exp] 686 / 0 AT5G37980 480 / 3e-171 Zinc-binding dehydrogenase family protein (.1) Lus10010989 [exp] 536 / 0 AT5G16990 483 / 2e-172 Zinc-binding dehydrogenase family protein (.1) Lus10010988 [exp] 536 / 0 AT5G16990 486 / 6e-174 Zinc-binding dehydrogenase family protein (.1) Lus10007853 [exp] 533 / 0 AT5G16990 468 / 3e-166 Zinc-binding dehydrogenase family protein (.1) Lus10007832 [exp] 517 / 0 AT5G16990 464 / 3e-165 Zinc-binding dehydrogenase family protein (.1) Lus10004379 [exp] 509 / 0 AT5G17000 487 / 4e-174 Zinc-binding dehydrogenase family protein (.1) Lus10036289 [exp] 442 / 2e-156 AT5G16990 463 / 1e-164 Zinc-binding dehydrogenase family protein (.1) Lus10040589 [exp] 365 / 2e-124 AT1G65560 446 / 3e-156 Zinc-binding dehydrogenase family protein (.1) Lus10003638 [exp] 338 / 2e-116 AT3G03080 356 / 8e-124 Zinc-binding dehydrogenase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G143700 [exp] 503 / 4e-180 AT5G16970 495 / 2e-177 alkenal reductase (.1) Potri.007G143800 [exp] 496 / 1e-177 AT1G26320 490 / 4e-175 Zinc-binding dehydrogenase family protein (.1.2) Potri.007G142400 [exp] 481 / 1e-171 AT5G16990 491 / 1e-175 Zinc-binding dehydrogenase family protein (.1) Potri.017G006000 [exp] 478 / 5e-170 AT5G37980 493 / 2e-176 Zinc-binding dehydrogenase family protein (.1) Potri.017G005700 [exp] 478 / 2e-169 AT1G26320 496 / 1e-176 Zinc-binding dehydrogenase family protein (.1.2) Potri.017G002300 [exp] 473 / 2e-168 AT1G26320 488 / 2e-174 Zinc-binding dehydrogenase family protein (.1.2) Potri.017G005400 [exp] 473 / 3e-168 AT5G37980 488 / 3e-174 Zinc-binding dehydrogenase family protein (.1) Potri.007G143600 [exp] 470 / 2e-167 AT5G16970 501 / 1e-179 alkenal reductase (.1) Potri.017G002700 [exp] 469 / 6e-167 AT1G26320 490 / 4e-175 Zinc-binding dehydrogenase family protein (.1.2) Potri.017G002950 [exp] 432 / 2e-152 AT5G16970 464 / 7e-165 alkenal reductase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00107 [flax] [poplar] ADH_zinc_N Zinc-binding dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10004380 pacid=23151940 polypeptide=Lus10004380 locus=Lus10004380.g ID=Lus10004380.BGIv1.0 annot-version=v1.0 ATGGCGGATGAGGAAGTACAGCAGAACAAGCAGGTGGTTCTGAAGGAATACGCCATCGGTTTCCCTAAGGAATCGCAATTCGGTGTCACCACCGTCTCGA TTTCCCGCAAAGTCCCCCATGGTTCCAATTCCGTCCTGTTCAAGAACCTTTACCTCTCCTGCGATCCTTACATGCGCGGCCGGATGACTCCCGTTTCTAA CGGCGATGCTGAAGATCCCCAGTTCAGCTCCTTCACTCTCGGCTCCCCAATATCAGGACTTGGGGTGAAGAAAGTGGTGGATTCAGCACACCCTGATTAC AAGATTGGTGATTTGGTTTGGGGAGGGATTACTTGGGAAGAGTATAGCATTGTTGAAAACCCTACTGGTCTGTTCAAGATTCCTGATGCAGATGTTCCAC TTTCCTACTACACTGGCATTCTTGGTATGCCTGGTATGACTGCTTACTTTGGATTTTATGATGTTTGCACTCCGAAGAAAGGAGAGTACGTCTTTGTTTC AGCAGCATCTGGTGCTGTTGGCCAGCTTGTTGGTCAATTCGCTAAATTGGCGGGTTGTTACGTTGTTGGAAGTGCTGGAAGCAAAGAAAAGGTTGAATTA CTGAAGAACAAGTTCGGTTTTGACGAGGCATTCAACTACAAAGAAGAGGATGACTTAGACAAAGCTCTGAAGAGGTACTTCCCTGAAGGCATCGACATCT ACTTCGAGAACGTGGGTGGTAAAACACTGGACGCGGTGCTCCTAAACATGAGAGTCCATGGCCGGATCGCAGCATGTGGGATGATATCCCAGTACAATCT GGAGGTGCCCGAAGGCGTTCACAACCTGATGACGATTGTATACAAGCGGGTTCGAATCCAAGGCTTCGTGGTTATTGATTACGTCGGTAGGTACGGTGAG TTCATAGGCAAGATGTTGCCTTACATCAAGGAAGGCAAAGTTATGTATGTGGAAGACGTTGCACAAGGACTGGAGAATGGACTGTCTGCACTGTTGGGGC TCTTCAGTGGGCGCAATGTTGGGAAGCAAGTGGTAGCCGTGGCTCATGACTGA
AA sequence Show only first row Show all	>Lus10004380 pacid=23151940 polypeptide=Lus10004380 locus=Lus10004380.g ID=Lus10004380.BGIv1.0 annot-version=v1.0 MADEEVQQNKQVVLKEYAIGFPKESQFGVTTVSISRKVPHGSNSVLFKNLYLSCDPYMRGRMTPVSNGDAEDPQFSSFTLGSPISGLGVKKVVDSAHPDY KIGDLVWGGITWEEYSIVENPTGLFKIPDADVPLSYYTGILGMPGMTAYFGFYDVCTPKKGEYVFVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEKVEL LKNKFGFDEAFNYKEEDDLDKALKRYFPEGIDIYFENVGGKTLDAVLLNMRVHGRIAACGMISQYNLEVPEGVHNLMTIVYKRVRIQGFVVIDYVGRYGE FIGKMLPYIKEGKVMYVEDVAQGLENGLSALLGLFSGRNVGKQVVAVAHD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G37980			Zinc-binding dehydrogenase fam...		Lus10004380 [exp]	0	1
AT4G34120		CBSX2, CDCP1, L...	LOSS OF THE TIMING OF ET AND J...		Lus10027885 [exp]	1.0	0.9328
AT5G37980			Zinc-binding dehydrogenase fam...		Lus10040177 [exp]	1.4	0.9264
AT2G21860			violaxanthin de-epoxidase-rela...		Lus10032756 [exp]	2.0	0.9099
AT1G21790			TRAM, LAG1 and CLN8 (TLC) lipi...		Lus10025673 [exp]	3.6	0.8857
AT1G20340		PETE2, DRT112	PLASTOCYANIN 2, DNA-DAMAGE-REP...		Lus10034554 [exp]	4.2	0.9207
AT5G67210		IRX15-L	IRX15-LIKE, Protein of unknown...		Lus10027879 [exp]	6.0	0.8869
AT5G16990			Zinc-binding dehydrogenase fam...		Lus10030087 [exp]	6.3	0.8928
AT4G38460		GGR	geranylgeranyl reductase (.1)		Lus10025096 [exp]	7.3	0.9022
AT5G61760		ATIPK2BETA	ARABIDOPSIS THALIANA INOSITOL ...		Lus10009385 [exp]	9.2	0.8830
AT3G17020			Adenine nucleotide alpha hydro...		Lus10037761 [exp]	9.8	0.8772

Compare expression of checked genes

Lus10004380 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.