Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G54010 410 / 5e-140 UDP-Glycosyltransferase superfamily protein (.1) AT4G27570 407 / 4e-139 UDP-Glycosyltransferase superfamily protein (.1) AT5G53990 407 / 5e-139 UDP-Glycosyltransferase superfamily protein (.1) AT5G54060 407 / 8e-139 UF3GT UDP-glucose:flavonoid 3-o-glucosyltransferase (.1) AT4G27560 403 / 3e-137 UDP-Glycosyltransferase superfamily protein (.1) AT1G64920 392 / 5e-133 UDP-Glycosyltransferase superfamily protein (.1) AT1G64910 391 / 9e-133 UDP-Glycosyltransferase superfamily protein (.1) AT2G22930 389 / 3e-132 UDP-Glycosyltransferase superfamily protein (.1) AT4G09500 386 / 6e-131 UDP-Glycosyltransferase superfamily protein (.1.2) AT3G29630 370 / 1e-124 UDP-Glycosyltransferase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040178 [exp] 834 / 0 AT5G54010 437 / 7e-151 UDP-Glycosyltransferase superfamily protein (.1) Lus10013337 [exp] 488 / 2e-170 AT5G54010 452 / 1e-156 UDP-Glycosyltransferase superfamily protein (.1) Lus10008453 [exp] 422 / 9e-145 AT5G54010 539 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Lus10039237 [exp] 407 / 1e-140 AT5G54010 240 / 5e-76 UDP-Glycosyltransferase superfamily protein (.1) Lus10003154 [exp] 286 / 3e-91 AT5G54010 318 / 3e-104 UDP-Glycosyltransferase superfamily protein (.1) Lus10025711 [exp] 187 / 7e-54 AT2G22590 473 / 2e-164 UDP-Glycosyltransferase superfamily protein (.1) Lus10035951 [exp] 184 / 1e-52 AT2G22590 464 / 3e-161 UDP-Glycosyltransferase superfamily protein (.1) Lus10012726 [exp] 175 / 3e-49 AT2G22590 471 / 3e-164 UDP-Glycosyltransferase superfamily protein (.1) Lus10043445 [exp] 171 / 2e-47 AT5G65550 225 / 3e-68 UDP-Glycosyltransferase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G097900 [exp] 429 / 2e-147 AT5G54010 498 / 1e-174 UDP-Glycosyltransferase superfamily protein (.1) Potri.011G061000 [exp] 348 / 7e-116 AT5G54010 468 / 6e-163 UDP-Glycosyltransferase superfamily protein (.1) Potri.017G041900 [exp] 303 / 6e-99 AT5G54010 348 / 1e-116 UDP-Glycosyltransferase superfamily protein (.1) Potri.006G179700 [exp] 294 / 8e-95 AT5G54010 349 / 2e-116 UDP-Glycosyltransferase superfamily protein (.1) Potri.010G182575 [exp] 190 / 6e-55 AT5G49690 468 / 7e-163 UDP-Glycosyltransferase superfamily protein (.1) Potri.017G042800 [exp] 186 / 3e-53 AT5G49690 377 / 3e-127 UDP-Glycosyltransferase superfamily protein (.1) Potri.014G088400 [exp] 175 / 8e-49 AT2G22590 374 / 4e-125 UDP-Glycosyltransferase superfamily protein (.1) Potri.001G030600 [exp] 169 / 4e-47 AT2G22590 537 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Potri.008G024900 [exp] 168 / 6e-47 AT5G65550 173 / 7e-49 UDP-Glycosyltransferase superfamily protein (.1) Potri.003G184400 [exp] 167 / 2e-46 AT5G49690 549 / 0.0 UDP-Glycosyltransferase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF00201 [flax] [poplar] UDPGT UDP-glucoronosyl and UDP-glucosyl transferase
Representative CDS sequence Show only first row Show all	>Lus10004381 pacid=23151926 polypeptide=Lus10004381 locus=Lus10004381.g ID=Lus10004381.BGIv1.0 annot-version=v1.0 ATGGCAACCACCGGCGGCGAATCAAACAAGCAGCTGAATGTGGTAATGTTCCCACTCTTCGCAATGGGACACATCACCCCTTTCCTCCACCTAGCCAACC GGCTCGCCGCCCGAGGCCACCGCATCTCTTTCTTGCTCCCTACTCGCACAATCCCCAAGCTAACCAACCTGATCATCAACACCCACGCGGATCTCATCAC CTTCCACCCAATCACAGTCCCCCACGTGCAAGGTCTCCCTCCGGGGGCTGAGCTCATCGCCGACGTCCCGCCTCATCTCGCCGGCCACATTTTCGCCGCC ATGGACGCCACTGAGGACCAGTTCACGTCCATCCTTCGCGGCGTCAGTCCCGACATCGTAATCTTCGACGCTGCACCATGGGTCTCACGCGCCGCCCGCG AGTTGGGATGCGTCCCCGTGTCGTACGGGACCTCATCAGCGGTCTGGGCAGCGATGCGGATCGTTCCGTCGGCGAGGATCGTGAAGGAGATGACGGACGA AGAGCTGGGCAGGACGCCGCCTGGCTACCCGTCTTCGGCGGTGATCCCAAGGCCCGACGAGATCGCCGGGGCTAGGTTGTTCGCCATGGAATTCGGACCC AGCTCGCTTTACGAACGAATAGTGTCTGTGATCCAGGGGAGTGAAGCCATAGCAATGAGGAGTTGCCGGGAGCTTGAAGGCAAGTACTTGGACTACTTGG GGGAGCAGCACGGGAAACGGGTGTTGTTGACTGGGCCGGTTTTGCCGAAGCTTGATGGGCTGGGCTTGGACGAGAAGTTGGGCTGTTGGCTCTCCAAATT CGAGCCCGGTTCAGTTGTGTACTGCGCTTTTGGGAGTGAAGTCGTTCTCCACAAAGACCAATTTCAAGAACTCCTCAGGGGATTGGAGCAATGCGGGCGA CCGTTTCTAACGGCACTGAAACCGCCACACGGTTGCAAGACAGTGGAAGAAGCGTTACCGGAAGGTTTTAAGGAGAGGGTGATCATCAAAGAAGGGAGAG GAATGGTGCACGAGGGATGGGTTCAACAGCCGCAAATTTTGGGGCATCCATCGGTGGGTTGCTTCGTGAGTCATTGCGGGTTCGGTTCGATGTGGGAGGC TTTGTTGAGCGACTGTCAGATACTGTTGATCCCAAACATAAGCGAACAGATACTGTGTACGATATTCATGGTGAAGGAGCTGAGATTGGCCTTGGAAGTA GACAAGGACGAGAATGGGTGGATTAGCAAGGAGGAGGTTTGCAGAGCGGTTGGAGCTGTGATGGATGAAGATAGTGATGTGGGGAAAGAAGTGAGGAGGA ATCATTTGAAGCTGAGAGAGGTTTTAGGAGATGATGATCTTCTGGATAAGTATGTCGATGATTTTGTTGCCCAGCTTCGTACTCTGCTTCCTTGTGGAGA TGAGATTAGACATGAATGA
AA sequence Show only first row Show all	>Lus10004381 pacid=23151926 polypeptide=Lus10004381 locus=Lus10004381.g ID=Lus10004381.BGIv1.0 annot-version=v1.0 MATTGGESNKQLNVVMFPLFAMGHITPFLHLANRLAARGHRISFLLPTRTIPKLTNLIINTHADLITFHPITVPHVQGLPPGAELIADVPPHLAGHIFAA MDATEDQFTSILRGVSPDIVIFDAAPWVSRAARELGCVPVSYGTSSAVWAAMRIVPSARIVKEMTDEELGRTPPGYPSSAVIPRPDEIAGARLFAMEFGP SSLYERIVSVIQGSEAIAMRSCRELEGKYLDYLGEQHGKRVLLTGPVLPKLDGLGLDEKLGCWLSKFEPGSVVYCAFGSEVVLHKDQFQELLRGLEQCGR PFLTALKPPHGCKTVEEALPEGFKERVIIKEGRGMVHEGWVQQPQILGHPSVGCFVSHCGFGSMWEALLSDCQILLIPNISEQILCTIFMVKELRLALEV DKDENGWISKEEVCRAVGAVMDEDSDVGKEVRRNHLKLREVLGDDDLLDKYVDDFVAQLRTLLPCGDEIRHE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G54060		UF3GT	UDP-glucose:flavonoid 3-o-gluc...		Lus10004381 [exp]	0	1
AT5G41850			alpha/beta-Hydrolases superfam...		Lus10032373 [exp]	1.0	0.9644
AT5G37730			unknown protein		Lus10033584 [exp]	2.0	0.9445
					Lus10000650 [exp]	3.0	0.9290
AT1G67950			RNA-binding (RRM/RBD/RNP motif...		Lus10034580 [exp]	7.7	0.8944
AT4G35000		APX3	ascorbate peroxidase 3 (.1)		Lus10028432 [exp]	11.8	0.9173
AT1G11300			protein serine/threonine kinas...		Lus10013245 [exp]	12.2	0.8852
AT4G26590		ATOPT5	ARABIDOPSIS THALIANA OLIGOPEPT...		Lus10043161 [exp]	12.7	0.8861
AT1G29380			Carbohydrate-binding X8 domain...		Lus10015259 [exp]	13.0	0.9064
AT3G15010			RNA-binding (RRM/RBD/RNP motif...		Lus10021035 [exp]	13.5	0.8999
AT3G04030	GARP		Homeodomain-like superfamily p...		Lus10002629 [exp]	14.8	0.9156

Compare expression of checked genes

Lus10004381 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.