Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G59390 360 / 4e-126 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040180 [exp] 477 / 1e-172 AT3G59390 364 / 6e-128 unknown protein Lus10007819 [exp] 331 / 4e-114 AT3G59390 301 / 3e-102 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G051300 [exp] 372 / 3e-131 AT3G59390 377 / 5e-133 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF10218 [flax] [poplar] DUF2054 Uncharacterized conserved protein (DUF2054)
Representative CDS sequence Show only first row Show all	>Lus10004383 pacid=23151909 polypeptide=Lus10004383 locus=Lus10004383.g ID=Lus10004383.BGIv1.0 annot-version=v1.0 ATGTCTAAACGTGGATCGACTCTGTGGTGTCTACTTCTCCAATTGCTGCTTCTCCATCTCCTTTCCTCCAAAGTTTCAGCAATAAGGAAAGACATCGGCT TCCGGGAAATCCAGATTTGCAGAACCACTGTTCAAGGAAGATACTTGCTATCAGACGACAACGGCCATGTATGTGATTCTTTATCAATTGATCCCAAATC CCGTTGTTGCCCCATGAAAGGAGAGAGATTCTCCTGCAATGGATGCAACCCCCTCTCAAGGTGCTGCAATTCGTATGAATACTGTGTTTCCTGCTGCCTG AACCCTTCCAAGACAAGGCAAGATGAGGTAACGAAGCTCAGAATAGCCAAGACAGCAACTGCAGGGACTTACGGGAGCGTGTTTGATTTCTGCGCTGCTC GGTGTCGCCATAGTAGCTGGAGTGTGGTTCATGAGAATGCTTACATCAGTGAGTTCCATCACTGCTTTGCTCTGCCTTCGAATCGATCAGGAAGAGGGGG CGGTAGTGATGATACGCGGCTGGTTGGGGTTAATGTGGTGATTGGTGGGCAAGGGGAGTCTTGTGATTCGGTTTGCAGGTGGAAAGGGCAGTCTTGTATT GGGAATAAGCTTACGGTGCTTAATGATTGCGAGATCATGCGTCGATACATGAGTTGTAAAGGTGGGTGCTTGGCCAGCATTGGTAGCGATCAGCCAGCTG AAGTTATTGACGATGCTCCTAAAGATCTGAACCCTGGAACTTGCTTGTACACCAAGGTGCAATCGATGCTCTCGTGTGATGGTTCTCATCGTCATACCCA GAGACTTTGCCCTTGTGCCTAG
AA sequence Show only first row Show all	>Lus10004383 pacid=23151909 polypeptide=Lus10004383 locus=Lus10004383.g ID=Lus10004383.BGIv1.0 annot-version=v1.0 MSKRGSTLWCLLLQLLLLHLLSSKVSAIRKDIGFREIQICRTTVQGRYLLSDDNGHVCDSLSIDPKSRCCPMKGERFSCNGCNPLSRCCNSYEYCVSCCL NPSKTRQDEVTKLRIAKTATAGTYGSVFDFCAARCRHSSWSVVHENAYISEFHHCFALPSNRSGRGGGSDDTRLVGVNVVIGGQGESCDSVCRWKGQSCI GNKLTVLNDCEIMRRYMSCKGGCLASIGSDQPAEVIDDAPKDLNPGTCLYTKVQSMLSCDGSHRHTQRLCPCA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G59390			unknown protein		Lus10004383 [exp]	0	1
AT1G61790			Oligosaccharyltransferase comp...		Lus10007647 [exp]	4.6	0.9142
AT2G32380			Transmembrane protein 97, pred...		Lus10027174 [exp]	6.5	0.9089
AT3G08640			Protein of unknown function (D...		Lus10003242 [exp]	8.3	0.9002
AT1G19480			DNA glycosylase superfamily pr...		Lus10010824 [exp]	10.2	0.8983
AT3G22110		PAC1	20S proteasome alpha subunit C...		Lus10042145 [exp]	13.0	0.8809
AT4G29870			Oligosaccharyltransferase comp...		Lus10035623 [exp]	13.6	0.8968
AT5G09590		HSC70-5, mtHSC7...	HEAT SHOCK COGNATE, mitochondr...		Lus10009039 [exp]	16.5	0.8846
AT4G05400			copper ion binding (.1.2)		Lus10008331 [exp]	16.9	0.8784
AT2G38360		PRA1.B4	prenylated RAB acceptor 1.B4 (...		Lus10009842 [exp]	21.0	0.8806
AT2G21090			Pentatricopeptide repeat (PPR-...		Lus10005064 [exp]	21.3	0.8769

Compare expression of checked genes

Lus10004383 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.