Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G17430 503 / 3e-174 O-fucosyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040182 [exp] 900 / 0 AT4G17430 509 / 5e-178 O-fucosyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G079400 [exp] 603 / 0 AT4G17430 585 / 0.0 O-fucosyltransferase family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10004385 pacid=23151910 polypeptide=Lus10004385 locus=Lus10004385.g ID=Lus10004385.BGIv1.0 annot-version=v1.0 ATGAAATCCGGACTGCGCGAGGAAAAGAATGCGCTATCCGCAACGGTTGGAAAACTATCCACGCTCGCAGAAAGAATGCGCTATCCACCGTTTAGCATAA TTGCAAAATATGAGACAGAAACTAAAAGAAAAGGTGAAAACAGTAATAGAAGAAAATTACAGATGGAGGCAAAGCCCAATAGGCCCAACTCAATCGCGTC GCCGTCTTCTTCGTCGATTGTCCTGCGAACTCCGACATTGATTGAATCAAACCACCGGTGGGCATCCTGGGGAGCAAACTTCCGATTAGCAATGAACACG ATCCTCAATCTCCAAAAAGATACAACAAAATCATGGCGAAAACGTAAATCCATGAACCCATCTCCTTACAGATCTCCTTCCTTCATCCTCGCCATTTCTT TCGTCACGCTCTTTATTTTCTTCTTCTTCTACCATTTCTCTTTTCACACCTCTGAATCTCTCTTCGTTTCCCAAACCCTAAATTTTCAAAACCCGAAATG TGGAAATATCCGAACTTCGATCGAGGTAGAGAAGTTCCTGTGGTACGCGCCCCACAGTGGATTCAGCAATCAGCAGTCCGAGCTGAAGAACGCGATACTG ATGGCGGGGATTCTGAACAGAACTTTGGTTGTGCCGCCAGTTCTCGATCACCATGCCGTTGTTCTCGGGAGCTGCCCCAAGTTTCGGGTTACGGAGCCTA ACGAGATCAGGGCTTCTGTTTGGAATCACGCCATCGACCTGATGGAGAGCGGGAGGTATGTATCAATGGCAACCATCATTGATCTGTCCTCGCTGGTGTC TGAATCGCTTCGTACGATCGATTTCAGGGAGTTCGCGTCGATATTCTGTGGTGTAAATATGGATTTGACTTGTGTTGATACGAACACCGTTGCCTCTTCT CCGTTTGATAGCCTTAGGGAGTGTGGAAATGTGCTGTCTGGGCGTAATGGTAACACAGATGGGTGTCTCTATGCAGTAAATGAGGACTGCAGAACCACAG TCTGGACTTATGACAATGGCGATGATGGATCTTTAGATTCATTTCAAGCTGATGAACTTCTCAAGAAGAGAAAGAGGATATCGTATGTGAGGAAGCGTCG AGATGTAGATAAGAACCTTGGACCGAGTTCTAAAGCTGACTCGGCCACTGTCCTGGCATTTGGATCTCTTTTCTCTGCTCCCTACAAAGGCTCAGAGTCT CATGTTGATATTCGCAATGTAAAGAGCAGCTCGAGAATAGCTTCTTTGATTGAGAAGAGCGAGCTCTTACCCTTTGTCCCTGAAATCTTAAATGCAGGGA AGAAGTTTGCGTTGGAGACAATAAAAGATCCTTTTGGTTGCGCACAGCTCAGATTGTTAGATGGGCAGTTTAAAAACCACTGGAAGGCTACGTTCCAGGG TCTAAGACAAATGCTTGAATCTTTGAACCAGGAAGGCGCTCACCCAGTTAACATTTTTGTAATGACCGATCTTCCTCGGGCTAACTGGAGCGGAACTTAT CTGGGGGAGTTAGCTAGTGATGAGAAGCACTATAAGTTGCTTTCTCTTGGAAGAGAAGACGGTTTAGTTGTTGGAACAGCAAGACAACTTGCAGAGAAAG CAAGCAAAGATCAGCATTTGTGCCCTAACCAGAAACTTCCGGACATTCTCTTAGACATTGAAGAGAGTGTATGCAGTTGTGCATCACTTGGTTTCGTTGG GACTGCTGGATCAACTATTGCTGAGAGCATACAGTTGATGAGGAAGTCAGATGTCTGTTCCGTGCGGAATCGGACTGCAAGATGA
AA sequence Show only first row Show all	>Lus10004385 pacid=23151910 polypeptide=Lus10004385 locus=Lus10004385.g ID=Lus10004385.BGIv1.0 annot-version=v1.0 MKSGLREEKNALSATVGKLSTLAERMRYPPFSIIAKYETETKRKGENSNRRKLQMEAKPNRPNSIASPSSSSIVLRTPTLIESNHRWASWGANFRLAMNT ILNLQKDTTKSWRKRKSMNPSPYRSPSFILAISFVTLFIFFFFYHFSFHTSESLFVSQTLNFQNPKCGNIRTSIEVEKFLWYAPHSGFSNQQSELKNAIL MAGILNRTLVVPPVLDHHAVVLGSCPKFRVTEPNEIRASVWNHAIDLMESGRYVSMATIIDLSSLVSESLRTIDFREFASIFCGVNMDLTCVDTNTVASS PFDSLRECGNVLSGRNGNTDGCLYAVNEDCRTTVWTYDNGDDGSLDSFQADELLKKRKRISYVRKRRDVDKNLGPSSKADSATVLAFGSLFSAPYKGSES HVDIRNVKSSSRIASLIEKSELLPFVPEILNAGKKFALETIKDPFGCAQLRLLDGQFKNHWKATFQGLRQMLESLNQEGAHPVNIFVMTDLPRANWSGTY LGELASDEKHYKLLSLGREDGLVVGTARQLAEKASKDQHLCPNQKLPDILLDIEESVCSCASLGFVGTAGSTIAESIQLMRKSDVCSVRNRTAR

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G17430			O-fucosyltransferase family pr...		Lus10004385 [exp]	0	1
AT4G17430			O-fucosyltransferase family pr...		Lus10040182 [exp]	4.7	0.7654
AT5G57460			unknown protein		Lus10004736 [exp]	9.1	0.8200
AT1G13980		VAN7, EMB30, GN	VASCULAR NETWORK 7, GNOM, EMBR...		Lus10037140 [exp]	17.3	0.8063
AT1G15690		FUGU5, AtVHP1;1...	FUGU 5, ARABIDOPSIS THALIANA V...		Lus10038111 [exp]	21.4	0.8019
AT5G13390		NEF1	no exine formation 1 (.1)		Lus10002569 [exp]	22.1	0.7997
AT2G20810		GAUT10, LGT4	galacturonosyltransferase 10 (...		Lus10039784 [exp]	22.8	0.7879
AT3G19870			unknown protein		Lus10012903 [exp]	28.0	0.7971
AT5G02310		PRT6, CER3	proteolysis 6 (.1)		Lus10024393 [exp]	33.0	0.7830
AT4G31480			Coatomer, beta subunit (.1.2)		Lus10027159 [exp]	33.0	0.7956
AT4G21700			Protein of unknown function (D...		Lus10005493 [exp]	42.4	0.7858

Compare expression of checked genes

Lus10004385 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.